PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016438280.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 315aa    MW: 35481.6 Da    PI: 9.2991
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016438280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603.1e-19177210134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+ C+ttkTplWR+gp g+ktLCnaCG+++rk +
  XP_016438280.1 177 CADCNTTKTPLWRSGPKGPKTLCNACGIRQRKAR 210
                     *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.1E-19171222IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.55E-13174211No hitNo description
Gene3DG3DSA:3.30.50.107.0E-16175210IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.558175207IPR000679Zinc finger, GATA-type
CDDcd002024.09E-12176204No hitNo description
PROSITE patternPS003440177202IPR000679Zinc finger, GATA-type
PfamPF003209.9E-17177210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTPTDHITNS TPPPPFPFVL NNEDYDLNHS LVSPNYYQAS SSSSYSSSYH EFFFNSTTNQ  60
NQTGYYHRDE YYTPPHQPEV DNEGGLYDVE KKNKVGSGLK LTLWKREDKN ENQNEKNPVK  120
WMSSKIKASD QTILEKTTNN STYIKLKLED QKQQPSYPLE TDYSSNNSNN NIPIRVCADC  180
NTTKTPLWRS GPKGPKTLCN ACGIRQRKAR RAMAAAAAAN GETLTTETSS SSMKKKVNKH  240
LHKEKITKVN VTVPYKKRCK FGQSSSSNTE PKKLGNFEDF LINLTNNLAL HQVFPQDEKE  300
AAVLLMALSS GLVHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ7475023e-34JQ747502.1 Nicotiana tabacum GATA-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016438280.10.0PREDICTED: putative GATA transcription factor 22
TrEMBLA0A1S3XEI90.0A0A1S3XEI9_TOBAC; putative GATA transcription factor 22
STRINGXP_009604300.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30972249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-17cytokinin-responsive gata factor 1