PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016435851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 560aa MW: 64282.8 Da PI: 5.45 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 64.2 | 2.8e-20 | 425 | 499 | 1 | 72 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnk..rykkikegekkrt 72 rW++ ev aLi++r+++e+++++ + k+ lWee+s+ m++ gfers+ +Ckekwen++k k++ke+ +++ XP_016435851.1 425 RWPQAEVEALIQIRNSLESKFQEaAGPKGVLWEEISNSMASMGFERSARRCKEKWENMHKcrTVKRTKEITREQL 499 8*********************9356999*****************************98435677777766654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.143 | 418 | 483 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-4 | 420 | 484 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0054 | 422 | 485 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.66E-22 | 424 | 484 | No hit | No description |
Pfam | PF13837 | 2.4E-14 | 424 | 485 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MQSDYEMAGI HQHRNRNQQP QVEQQQQQQQ HRFIMENAST SSPFFPINYS HHYPPQQPNP 60 LLQPFTQQFF QYQHLHYRSI LEQQQHQDIR LELNAEGENH QVQGVSVPFF PLSFKEDSSS 120 KGEREEDALI RGSEGYCNEA RQTSLAVSHC WQNQEDSAIK QPFWKPLCAE FSNGNNNNSN 180 ESEKNKQEED QEMYPDEIHQ QQIIKSLEEN KCRVVFGELE AIYATNAETN TTATTNIHRM 240 ASESVLTAED LPINNNNNVS FPVATCNDSN QTSGPTAIAT TTPGAIDIGS DSASVGEATR 300 EDEVHNKRKR RRKAKEGTSI TMARFFESLV KKLVNHQEDL QKRFMETIER LDQERKEREE 360 TWREQELAKL KKEAAVRAQE RTLASNREAA LVSYLEKLTG QKINFQHGSE PDKSCNSLVK 420 LNNKRWPQAE VEALIQIRNS LESKFQEAAG PKGVLWEEIS NSMASMGFER SARRCKEKWE 480 NMHKCRTVKR TKEITREQLD DGNNNIDFVT QGNDTVDDHL GTVNLTEGNK GNSEKDKHGN 540 GESKNGNWKE EMEEIKEGEI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 306 | 311 | KRKRRR |
2 | 306 | 312 | KRKRRRK |
3 | 307 | 311 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016435851.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A1S3X7J0 | 0.0 | A0A1S3X7J0_TOBAC; trihelix transcription factor GT-2-like | ||||
STRING | XP_009782860.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11622 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76890.2 | 2e-33 | Trihelix family protein |