PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016435166.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 250aa MW: 28277.8 Da PI: 9.9716 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.9 | 1.2e-15 | 11 | 99 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkv++p + ++ l++p f+ + +g+k e + tl++ +W+v + +++++ +++ kGW++Fv+ +Lk gDf vF++ g+++f v++ XP_016435166.1 11 FFKVMVP---GFHAKLTIPPAFCLKLKGEKSE--KGTLKH-GKGTWNVGI--GRSKNGvMWFDKGWEQFVQNYNLKIGDFAVFEHLGNMNF--SVSL 97 6777744...456679*******999887555..566666.4569*****..777777799************************999999..7777 PP E- CS B3 97 fr 98 ++ XP_016435166.1 98 LD 99 66 PP | |||||||
2 | B3 | 51.6 | 1.6e-16 | 163 | 238 | 14 | 88 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.s 88 l +p +f+ ++ + +++t+tl+ +sg s v l+++ ++++ +++t+GW++F ++n+Lk+gD+++F+ d++ s XP_016435166.1 163 PYLHIPTEFCHSNALL--QNTTITLTGPSGISCPVSLRICPGGKTlyVIMTTGWRDFFSSNKLKVGDVCIFQIDRTnS 238 4589******999877..6779***************8877777798999**********************887634 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.617 | 8 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 9 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.26E-15 | 9 | 99 | No hit | No description |
SuperFamily | SSF101936 | 3.53E-18 | 10 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-12 | 11 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-14 | 11 | 101 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-17 | 146 | 244 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.19E-17 | 148 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 7.5E-6 | 149 | 242 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.35E-15 | 149 | 238 | No hit | No description |
PROSITE profile | PS50863 | 11.11 | 150 | 250 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.3E-14 | 164 | 239 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MENELPISRR FFKVMVPGFH AKLTIPPAFC LKLKGEKSEK GTLKHGKGTW NVGIGRSKNG 60 VMWFDKGWEQ FVQNYNLKIG DFAVFEHLGN MNFSVSLLDS TGCDKKFLML EDGKQQVPSQ 120 VKSPECRIEK RKPEGDVLIH QYVKGSSEFT ARIKEYNVRK RSPYLHIPTE FCHSNALLQN 180 TTITLTGPSG ISCPVSLRIC PGGKTLYVIM TTGWRDFFSS NKLKVGDVCI FQIDRTNSDS 240 KSITMNVRVM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016435166.1 | 0.0 | PREDICTED: putative B3 domain-containing protein REM15 isoform X1 | ||||
TrEMBL | A0A1S3X5P5 | 0.0 | A0A1S3X5P5_TOBAC; putative B3 domain-containing protein REM15 isoform X1 | ||||
STRING | XP_009619629.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8536 | 16 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00260.1 | 1e-22 | B3 family protein |