PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016434883.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 259aa    MW: 29229.8 Da    PI: 4.6865
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016434883.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.32.9e-39101101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+lk+l++++ + dam+s+++eA+++ r PvyG+v+ i +l+qql+ + +el
  XP_016434883.1  10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILKQLDDDDqKADAMKSIIFEADMWERFPVYGCVEYIYHLRQQLQFALEEL 104
                     7************************************************655549**************************************** PP

          DUF260  95 allkee 100
                     +++ ++
  XP_016434883.1 105 HYVYAQ 110
                     998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.5379111IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-3710106IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILKQLDD  60
DDQKADAMKS IIFEADMWER FPVYGCVEYI YHLRQQLQFA LEELHYVYAQ LALYREQQQQ  120
QLALECGVTS EIPFVNGLSV GPFFTSEGES SEGGPKTNLM GSNSIFDHNN SIAFPASDHA  180
IFGFGVRDDQ RDISHEYECL INPFNNIMAD DRQSYVETKE ACDSSSESSW KDTQSLENLS  240
QNELRNAAAC FSLTSRVTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2421144114LOB family transfactor Ramosa2.1
5ly0_B2e-2421144114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016434883.10.0PREDICTED: LOB domain-containing protein 2-like
TrEMBLA0A1S3X5920.0A0A1S3X592_TOBAC; LOB domain-containing protein 2-like
STRINGXP_009612871.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-29LOB domain-containing protein 27