PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015902364.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 294aa    MW: 32511.8 Da    PI: 8.3256
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015902364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.72.8e-17221255135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  XP_015902364.1 221 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 255
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-14215269IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.147215251IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15216279No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13219253IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.98E-11220267No hitNo description
PROSITE patternPS003440221246IPR000679Zinc finger, GATA-type
PfamPF003205.8E-15221255IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDFCRNVSVA GEHQQEQVIS PPCSKLSGLS TAATGLDDLF SAQNTEADVN LEWLSIFVED  60
CLSSKGNCLP PPTNIETTST TPKSSKALPL PLHLQKKSQQ NPTSSSSSLQ NLAVPGKARS  120
KRKRAVVPKN RTNPLTSWSN NLILQGQTLQ IPSSDPPLLK QAYWLADSEL FVPKKDENSS  180
LRSDEHEETG EEEADEDQKR IMVSKENLEC NNGQQPMPRR CTHCLAQRTP QWRAGPLGPK  240
TLCNACGVRY KSGRLLPEYR PAKSPTFVSY LHSNSHKKVM EMRMSLLSSI PSGE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015902364.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015902364.10.0GATA transcription factor 9-like
RefseqXP_015902365.10.0GATA transcription factor 9-like
RefseqXP_024923656.10.0GATA transcription factor 9-like
TrEMBLA0A2I4DUI31e-121A0A2I4DUI3_JUGRE; GATA transcription factor 9-like
STRINGEOY112031e-118(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-40GATA transcription factor 9