PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015901105.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

G2-like

Protein Properties

Length: 335aa MW: 36630.8 Da PI: 6.9386

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015901105.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.6	6.6e-34	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl XP_015901105.1 48 KQRLRWTHDLHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.894	45	105	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-17	47	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-32	47	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.2E-25	48	103	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-9	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	134	180	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MYQPKSVPSS NIAHNNSLVH GQHLESGANT MDSINGGGNL NNSSLASKQR LRWTHDLHER 60 FVDAVAQLGG PDRATPKGVL RVMGVQGLTI YHVKSHLQKY RLAKYLPDST SDGKKADKKE 120 TGDVLSNLDG SSGMQITEAL KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR 180 LSGVLSETPG SGLSALVSGD NHPESDKTDP ATPAPTSESP LQDKTAKERV PDKSLSIDES 240 FSSHHEPLTP DSSCHAGSPA ESPKGERSTK KQRVNMSGGY SNPEIVLTHQ ILESSLNTSF 300 QQPHPVFLTR EQFEPSTGIT VGNEDHLEKV TGSNL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-22	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-22	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-22	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-22	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-22	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-22	48	105	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-22	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-22	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-22	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-22	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-22	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-22	48	105	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015901105.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015901105.1	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	1e-140	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	W9RQE9	0.0	W9RQE9_9ROSA; Myb family transcription factor APL
STRING	XP_010096513.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-124	G2-like family protein