PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015900346.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 252aa    MW: 28809.3 Da    PI: 6.1837
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015900346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-1085136154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +++ h e+Er+RR++    ++ +r+llP+       +K s ++   +A +YIk+L
  XP_015900346.1  85 KKVVHREIERQRRQETAALYSSIRSLLPPeY---LRGKRSISDHMHEAANYIKDL 136
                     6789*************************77...9******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.92E-782141No hitNo description
SuperFamilySSF474596.54E-1283160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.01184136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-885155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-785136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDYIPSDIFH FDQTDELFHM SCFPCSQQHD EILEDQIPPT PSHSGGDINL THDPKFGRRR  60
RLRSSVISFD ENDDDHENPN ANKKKKVVHR EIERQRRQET AALYSSIRSL LPPEYLRGKR  120
SISDHMHEAA NYIKDLNKRI QELSDKGDEL KSMKSPLSPS TAQQQDSQRR DSDSVEVRFS  180
GAGMEVIINT ALRQGLPLSS VLKVIIAEGL TINSCVSTKV NERLLHTIDI EVNKSISMDP  240
SELEQKLKNL EY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015900346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900346.10.0transcription factor bHLH120
TrEMBLW9S6M43e-68W9S6M4_9ROSA; Uncharacterized protein
STRINGXP_010108068.15e-69(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-36bHLH family protein