PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015899747.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family C2H2
Protein Properties Length: 361aa    MW: 41820.7 Da    PI: 9.106
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015899747.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.000771840123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C +Cg + s ks+   H+ tH
  XP_015899747.1 18 YFCDYCGICRSKKSLVAAHMLTH 40
                    78********************6 PP
2zf-C2H220.81e-066485223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +Cp Cg sF+ + +Lk+H+++H
  XP_015899747.1 64 TCPECGVSFKKPAYLKQHLQSH 85
                    6*******************99 PP
3zf-C2H214.97.8e-0591115123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   C+ s++rk++L+rH+  H
  XP_015899747.1  91 YRCSveGCHSSYRRKDHLTRHLLQH 115
                     99*******************9887 PP
4zf-C2H211.60.00087120145123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     ++Cp  +C++ F  + n krH r  H
  XP_015899747.1 120 FRCPieNCNREFAIQGNVKRHGRQlH 145
                     89*******************98777 PP
5zf-C2H218.94e-06157181123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y+C+   Cgk+F+  s L++H+ +H
  XP_015899747.1 157 YVCQeiGCGKVFRFASRLQKHLDSH 181
                     99********************998 PP
6zf-C2H2193.9e-06248272223
                     EET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     kC+   C+ +Fs+ksnL++H r  H
  XP_015899747.1 248 KCNykGCDHTFSNKSNLQQHVRAvH 272
                     69999****************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355151840IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.0486390IPR007087Zinc finger, C2H2
SMARTSM003550.00756385IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.3E-76484IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.22E-1064115No hitNo description
PROSITE patternPS0002806585IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-1185117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.6691120IPR007087Zinc finger, C2H2
SMARTSM003550.006891115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093115IPR007087Zinc finger, C2H2
SuperFamilySSF576673.86E-6101150No hitNo description
Gene3DG3DSA:3.30.160.602.4E-4118140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.383120150IPR007087Zinc finger, C2H2
SMARTSM003552.5120145IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122145IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-7151181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.11E-5152181No hitNo description
PROSITE profilePS5015710.845157186IPR007087Zinc finger, C2H2
SMARTSM003550.0029157181IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159181IPR007087Zinc finger, C2H2
SMARTSM003552.2189214IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280191214IPR007087Zinc finger, C2H2
SMARTSM0035518217238IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.42E-7230284No hitNo description
PROSITE profilePS5015712.736247277IPR007087Zinc finger, C2H2
SMARTSM003551.6E-4247272IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-7248278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280249272IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEEVDDIKKP IFRDIRRYFC DYCGICRSKK SLVAAHMLTH HKEEVNKARS DGDGDAGGLK  60
ASNTCPECGV SFKKPAYLKQ HLQSHSLERP YRCSVEGCHS SYRRKDHLTR HLLQHQGKLF  120
RCPIENCNRE FAIQGNVKRH GRQLHDEDRP STTQKQYVCQ EIGCGKVFRF ASRLQKHLDS  180
HVKLDSVEAF CSEPGCMKPF TNEQCLKAHL QSCHQHITCE ICGTKQLRKN IKRHLRAHDT  240
KDSTERVKCN YKGCDHTFSN KSNLQQHVRA VHLKKKPFVW GFSGCSIRFS YKHLRENHEK  300
TGAHVCIHVS LILGSEDIIR HQILENEFMH GEWYFPIKRE ILERRMSSSV QGQEVDGRGS  360
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tf6_A2e-156720919155PROTEIN (TRANSCRIPTION FACTOR IIIA)
1tf6_D2e-156720919155PROTEIN (TRANSCRIPTION FACTOR IIIA)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015899747.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024935382.10.0LOW QUALITY PROTEIN: transcription factor IIIA-like
SwissprotQ84MZ41e-122TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A2P5EHL11e-160A0A2P5EHL1_TREOI; TFIIH C1-like domain containing protein
STRINGXP_008219031.11e-155(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30693370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.21e-125transcription factor IIIA