PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015898971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 270aa MW: 29725 Da PI: 8.9116 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.0004 | 204 | 226 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H XP_015898971.1 204 ECPQCGAKFSSVTTLVEHVEKvH 226 5*****************99888 PP | |||||||
2 | zf-C2H2 | 16.8 | 1.9e-05 | 242 | 264 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F+++ +L+ H + H XP_015898971.1 242 VCPKCSRGFRDPVSLVEHVERdH 264 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1110.10 | 5.3E-11 | 68 | 130 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 1.96E-8 | 70 | 121 | No hit | No description |
SMART | SM00355 | 220 | 76 | 106 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF01428 | 1.2E-7 | 78 | 118 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.019 | 203 | 226 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.515 | 203 | 226 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13894 | 5.8E-4 | 204 | 226 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 205 | 226 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.6E-4 | 207 | 226 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 6.8 | 241 | 264 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.85 | 241 | 269 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 243 | 264 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MYVMSAEKGL VFCLEHRSYI KHSCPKADKQ DVTVVICPLC AKGVRLIPDE DPNITWERHV 60 NTDCDPSNYE KVTKKKKCPV PGCKDILTFS NTIKCRDCLV DHCLKHRFGP DHKCPGPKKP 120 EPSFPFMGLL SRSKKEDPKS NRAPLTASSP KWATSFLNAA SSVRASAEAS VTKLSNEISE 180 KWQIARDGMA QSSSSGSRNG QKEECPQCGA KFSSVTTLVE HVEKVHERGG NRAGGKKVTI 240 DVCPKCSRGF RDPVSLVEHV ERDHGGTSKA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015898971.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024922676.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like, partial | ||||
Swissprot | Q8VZ42 | 1e-113 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | W9RRL3 | 1e-167 | W9RRL3_9ROSA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
STRING | XP_010102532.1 | 1e-167 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5864 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-111 | C2H2 family protein |