PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015897292.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 309aa    MW: 35609.9 Da    PI: 6.2555
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015897292.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.51.2e-22136196259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg +WrKYGqK++ ++++pr+Y+rCt++   gC+++k+++r + +p++  +tY g+H+++
  XP_015897292.1 136 NDGQTWRKYGQKVILNAKYPRHYFRCTYKydqGCKATKQIQRIQVNPSLYRTTYFGNHTCR 196
                     8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-23128196IPR003657WRKY domain
SuperFamilySSF1182901.83E-22129196IPR003657WRKY domain
PROSITE profilePS5081119.485130193IPR003657WRKY domain
SMARTSM007748.5E-34135197IPR003657WRKY domain
PfamPF031065.3E-22136196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MEGFWPEDLV STNFIQKKVN DELVAGQELA KQLRNVLAKS DDDPRSAEDL LMQIVKSFSN  60
TLSILNFEEG HDVASVISQI QTDLPCLDAR KMKDHSRESF RRSTTTPTKK DRRAFYDRRR  120
TSSLRTWNID TPTLINDGQT WRKYGQKVIL NAKYPRHYFR CTYKYDQGCK ATKQIQRIQV  180
NPSLYRTTYF GNHTCRNLHQ DPELILDCTS PSDTSIFISF NSTNLTNKQD RVPFLSSLSS  240
IKQEIKEDII TCDTNHNFQT FSSSDNFLFP DLAAFPSPAE AMEVLSSTLD QSDYGDAMYG  300
MMEYDNFLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22135196869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015897292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015897292.10.0probable WRKY transcription factor 70
TrEMBLA0A2P5CHL39e-83A0A2P5CHL3_PARAD; WRKY domain containing protein
STRINGXP_010098011.11e-73(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19953486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.15e-39WRKY DNA-binding protein 70