PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015896335.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family bHLH
Protein Properties Length: 546aa    MW: 60005.7 Da    PI: 7.0718
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015896335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.23e-13358403454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YIk+L
  XP_015896335.1 358 NHVEAERQRREKLNNRFYALRSVVPNV-----SKMDKASLLNDAVIYIKEL 403
                     799***********************6.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.5E-4627223IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.511354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-18357424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-14358408No hitNo description
PfamPF000106.5E-11358403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-17358417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-15360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MEEIMSSCSS STLMSAACQE SIPPTIQNRL QFIVRSRPEW WVYSIFWQAY KDNSGRVTLS  60
WCDGHFRGNN KDKSAAGHAT MNRAVNEQQS KFGGVDLERK QRVMFSGELV ESLFEENVDV  120
ERLEDSGGGD HVTDSEWFYT VSVTQSFGVG SGILGRAFSS RAFVWLAGAH QLQLYDCDRV  180
KEARMHGIQT LVCIATPCGV IELGSCFTIK EDWSLIQLTK SLFGNSDINA ANPPKRVGLD  240
LHTNSLNLAP FLEIGTGRDH SGVIDQKEPT IMLHHHRHAH NLLENGITKK EAASAGVINI  300
NPAAAVGGGG GGSSSDSGPS DSDGNFASPT RAAADNDNNR LKKRGRKPVA CGRESPINHV  360
EAERQRREKL NNRFYALRSV VPNVSKMDKA SLLNDAVIYI KELKDKIKQL ETKLEQQAAP  420
AAAVASSQIQ IQMGSGTSGV VDNRSSLWLP PPFSSSSCRS SSETNSLMEV DVRIVGSEAM  480
IRVQCPDVNY PSARLMNALR DLEFQIYHVS ISSVKDLMLH DVVVRVPMGF TCEEAMRNAI  540
LRLLHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-25252238192Transcription factor MYC3
4rqw_B2e-25252238192Transcription factor MYC3
4rs9_A2e-25252238192Transcription factor MYC3
4yz6_A2e-25252238192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015896335.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896335.10.0transcription factor bHLH28-like isoform X1
RefseqXP_015896336.10.0transcription factor bHLH28-like isoform X2
TrEMBLB9RYU51e-157B9RYU5_RICCO; DNA binding protein, putative
STRINGXP_002518914.11e-158(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46830.12e-61NACL-inducible gene 1