PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015893770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 156aa MW: 18587.2 Da PI: 9.9368 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 76.4 | 5.5e-24 | 36 | 123 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Y++YA+++GFsvrk k ++ + g+i kr + Cskeg+r++++++++ ++ r etr+gCka+++++ e gkw +++++l+HnH+l XP_015893770.1 36 EYYKKYAQQIGFSVRKGKLNRL-EIGTIRKRYLFCSKEGFRSTKSSSNNIKKYWRRETRMGCKANIQLTVE-GGKWLISDVVLDHNHDLD 123 69******************99.6677********************999999*****************9.***************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.6E-21 | 36 | 123 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 156 aa Download sequence Send to blast |
MDYNPNWLLQ FRKGKFNLYL YQKKGMEFSS EKEAYEYYKK YAQQIGFSVR KGKLNRLEIG 60 TIRKRYLFCS KEGFRSTKSS SNNIKKYWRR ETRMGCKANI QLTVEGGKWL ISDVVLDHNH 120 DLDRLTIQWS LCSSVREENL FTGYNSKEPE PSTEHL |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015893770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443203.1 | 4e-33 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K1XBC7 | 8e-32 | A0A2K1XBC7_POPTR; Uncharacterized protein | ||||
TrEMBL | U7DWW6 | 9e-32 | U7DWW6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0149s00230.1 | 1e-32 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3607 | 9 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59470.2 | 2e-12 | FAR1 family protein |