PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015892867.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family B3
Protein Properties Length: 443aa    MW: 49887.5 Da    PI: 7.9128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015892867.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3491.1e-1596180292
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                     +k+++ps+v+   +l lpkkf+  h   +++++++tl de+ +++e k+ ++k +    l++GW++F  a++L egD++vF+l+  s+f++
  XP_015892867.1  96 VKTMLPSHVTGGFWLGLPKKFCHLHL--PNNDMMITLADENKEVYETKYLVEKVG----LSGGWRGFSIAHKLVEGDVLVFHLVTPSKFKF 180
                     699*******************6663..45789****************444444....***********************998788754 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-1789180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-2190181IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-2493181No hitNo description
PROSITE profilePS5086310.47595190IPR003340B3 DNA binding domain
SMARTSM010192.6E-1895190IPR003340B3 DNA binding domain
PfamPF023628.9E-1496180IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MAVIQEQRKT MVDSPLKSNR GKRPQKVEKL FRKKLFSLYQ KTETHAVSDR PVKSENNKRK  60
RATAESTCHN AEARASVLEQ AKEVQANLAP DSPSLVKTML PSHVTGGFWL GLPKKFCHLH  120
LPNNDMMITL ADENKEVYET KYLVEKVGLS GGWRGFSIAH KLVEGDVLVF HLVTPSKFKF  180
TGTFSLVKNS LMSLLLQDEM DCALGLLKLE ACVDRMDIAN DIKHADDTDA CQKETVGGLK  240
SLSYNNPEGE ILDQSDNENK DIISEVLDGI RLSDSVVSCQ EVRSFKDFNV LVNGLIIDSE  300
ISKYLKAKYY ELCCSQKTFL HEYLLEGLNC KLAAGIILET INIADAIRSS KITTSKDDFI  360
AWDKTLKCFE VLGMKVSFLR ARLDQLLNIA SKSKSYKEAK LERDRAEAEL RNLEAKLLVA  420
KQTMNRLDTK IELIFQEVAS APW
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015892867.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024932981.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLA0A251MZ041e-171A0A251MZ04_PRUPE; Uncharacterized protein
STRINGXP_008236526.11e-161(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-36B3 family protein