PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015889640.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

bHLH

Protein Properties

Length: 326aa MW: 35961.7 Da PI: 6.6918

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015889640.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.6	1.2e-09	53	102	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l + +K++Ka+iL+ +++ +k+L XP_015889640.1 53 RKVQKADREKLRRDRLNEQFLELGNTLDPE----RPKNDKATILTDTIQVLKDL 102 5677889******************997....69*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.065	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.8E-13	53	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.26E-7	53	106	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.0E-12	53	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.2E-7	53	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-6	58	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDPWKSDDFS PASAPSSTQP LSVSVPTSNR SHTSHSDSRQ RLDVEVKDPI AARKVQKADR 60 EKLRRDRLNE QFLELGNTLD PERPKNDKAT ILTDTIQVLK DLTAEVTRLK AEYTALSEES 120 RELTQEKNEL REEKVSLKSD IENLNAQYQQ RVRVMFPWAA IDPSVVMGPP YSYPVPVPVP 180 PGSIPMHPSL QPFPFFGSQN PGTIPNPCST FVPYPTPSNP PVEQPAAQYA STSHTSSKED 240 SKRKSSDHQR GNNVERCDDS NDVATDLELK IPGSSVRLDS SSGGRKGKQS QRKERSATDG 300 SSSSRYSSSQ VLQDSSSNSV GDPPKS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015889640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015889640.1	0.0	transcription factor bHLH121-like
Swissprot	Q9LT23	4e-85	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A498KGZ8	0.0	A0A498KGZ8_MALDO; Uncharacterized protein
STRING	XP_008336910.1	1e-180	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2282	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.1	4e-71	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]