PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015887721.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 296aa    MW: 34314.4 Da    PI: 9.1272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015887721.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.6e-192269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll ++v+++G g+W+++ar  g++R +k+c++rw +yl
   XP_015887721.1 22 KGPWTAEEDRLLMEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                     79********************************************97 PP
2Myb_DNA-binding521.6e-1675119147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   XP_015887721.1  75 RGQITPHEENIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8281773IPR017930Myb domain
SuperFamilySSF466892.27E-3019116IPR009057Homeodomain-like
SMARTSM007175.5E-162171IPR001005SANT/Myb domain
PfamPF002492.3E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-242376IPR009057Homeodomain-like
CDDcd001673.30E-112469No hitNo description
PROSITE profilePS5129419.92174124IPR017930Myb domain
SMARTSM007177.5E-1574122IPR001005SANT/Myb domain
PfamPF002496.4E-1475119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2477123IPR009057Homeodomain-like
CDDcd001674.41E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MYWGAMASNM GWGIIEEEGW RKGPWTAEED RLLMEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEENIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKVSSDS NEKAKTRILK RQQFHLQQQQ QQQQQQQLQQ QQQQQQFQQQ QQQQQYFQLN  180
QMDLKRIMAL LDENIDHKAP PSNNQPQMII KQDLGTTIYP HTGDQDQQAG FFYSMINGNN  240
GSSSSSSSVP ETSNDDILWD GLWNLDDVHG GFNAAAATCC ANTSKASVHN LVMPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-262212427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015887721.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887721.10.0transcription factor MYB92
TrEMBLA0A2P5FAR51e-124A0A2P5FAR5_TREOI; MYB transcription factor
STRINGXP_008224023.11e-123(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-79myb domain protein 305