PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015886100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | NAC | ||||||||
Protein Properties | Length: 613aa MW: 68883.3 Da PI: 4.4781 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173 | 9.2e-54 | 18 | 144 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrFhPtdeelv +yLkkk+ gk+l++ ++i+e+d+yk++P++Lp +k+++++++w+fFs+rd+ky++g r+nrat++gyWkatgkd+++++ XP_015886100.1 18 PPGFRFHPTDEELVLYYLKKKICGKRLKI-DIIAETDVYKWDPEELPglSKLRSGDRQWFFFSPRDRKYPNGARSNRATRHGYWKATGKDRTITC 111 8****************************.99***************6449999***************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ vg+kktLvfykgrap+ge+tdWvmhey+l XP_015886100.1 112 -NSRSVGVKKTLVFYKGRAPSGERTDWVMHEYTL 144 .999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-59 | 14 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.534 | 17 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.9E-28 | 18 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MVSSDASVGG FCDNQVWPPG FRFHPTDEEL VLYYLKKKIC GKRLKIDIIA ETDVYKWDPE 60 ELPGLSKLRS GDRQWFFFSP RDRKYPNGAR SNRATRHGYW KATGKDRTIT CNSRSVGVKK 120 TLVFYKGRAP SGERTDWVMH EYTLDEEEFK RCQNVKEYYA LYKAYKKSGP GPKNGEQYGA 180 PFREEDWADD ECPDFNSPIT LNDPVNKDRE FISNGDVRVE RQIPPSNDLE QFLKQIAEVP 240 LDLPHNNAYT YTPSQVMSEQ ETQSTLVDPS SRDIVLPEPV QSNVQQCNLQ ASFDVTESAV 300 SQLQSHEVSE VTSAPNIHEQ EQPLILPEED FLEMDDLLGP EPNFANSDQS LGNLRFDETD 360 RLSELDLFQD AGMFLNEMEP TDQATISQPY VNSLEQNMVT QFGYQLQANA AGASLVNNQM 420 YPEGLDPIYN QIYSDSGHIN NQLYPDGVDQ INNQFYPDGS AQIDNQLWAH DQGINNYTSA 480 EVNYGSLSNP SSGVVCDSSN YQAEANKNQT SNNGAATSQL SSALWAFVES IPTTPASAAE 540 NALVNRAFGR MSSFSRMRIN ARNTNDIAGN NAETVRKAVS KRGFILFPVL VAVFAILWVL 600 IGTMRLWGRS IPA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-50 | 18 | 144 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015886100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015886100.1 | 0.0 | NAC domain-containing protein 17-like | ||||
TrEMBL | A0A2P5FR66 | 0.0 | A0A2P5FR66_TREOI; NAC domain containing protein | ||||
STRING | XP_008237396.1 | 0.0 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-146 | NAC domain containing protein 17 |