PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884347.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family MYB
Protein Properties Length: 313aa    MW: 34430.5 Da    PI: 7.8013
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884347.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.2e-191257147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
   XP_015884347.1 12 KGPWSPEEDEALQRLVQNYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 57
                     79******************************.***********985 PP
2Myb_DNA-binding582.1e-1866108347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T+eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
   XP_015884347.1  66 PFTPEEDEAIIRAHERFGNK-WATIARLLN-GRTDNAIKNHWNST 108
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.017758IPR017930Myb domain
SuperFamilySSF466891.01E-329105IPR009057Homeodomain-like
SMARTSM007171.1E-161160IPR001005SANT/Myb domain
PfamPF002491.9E-181257IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-261365IPR009057Homeodomain-like
CDDcd001674.90E-161456No hitNo description
PROSITE profilePS5129425.34559113IPR017930Myb domain
SMARTSM007174.7E-1663111IPR001005SANT/Myb domain
PfamPF002491.1E-1566108IPR001005SANT/Myb domain
CDDcd001672.00E-1366109No hitNo description
Gene3DG3DSA:1.10.10.604.5E-2466112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MASTKKELDR IKGPWSPEED EALQRLVQNY GPRNWSLISK SIPGRSGKSC RLRWCNQLSP  60
EVEHRPFTPE EDEAIIRAHE RFGNKWATIA RLLNGRTDNA IKNHWNSTLK RKCSSMTDDL  120
NGDEHEQQPL KRSASVGAGT VVSGLCFNPG SPSGSDLSES SLPGISPSHA YRPLPITVPV  180
SAPGQQLETL SSTTDPPTSL SLSLPGSDSG EVSNQGCGFR SNRAVSPTQN LHPQTPAISV  240
QRETASAFNQ SDRSGELCYE KQFFSAEFLA VMQEMIRKEV RNYMSGIEQN GLCLHTDAIR  300
NAVVKRIGIS KIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-41111133105MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-42111133105C-Myb DNA-Binding Domain
1msf_C9e-42111133105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884347.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884347.10.0transcription factor MYB44-like
SwissprotO231601e-95MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A314YAK91e-157A0A314YAK9_PRUYE; Transcription factor MYB44
STRINGevm.model.supercontig_21.1451e-156(Carica papaya)
STRINGEMJ289141e-156(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84334124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.15e-77myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]