PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015884033.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family WRKY
Protein Properties Length: 266aa    MW: 29844.3 Da    PI: 9.1635
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015884033.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30100159159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     ++Dgy+WrKYGqK+ k+++ pr+Y+rC++a gCpvkkkv+rs++d++v++ tYeg+Hnh+
  XP_015884033.1 100 VKDGYQWRKYGQKVTKDNPSPRAYFRCSMApGCPVKKKVQRSKDDKSVLIATYEGQHNHD 159
                     58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-3091160IPR003657WRKY domain
PROSITE profilePS5081127.07295161IPR003657WRKY domain
SuperFamilySSF1182905.49E-2697160IPR003657WRKY domain
SMARTSM007742.0E-35100160IPR003657WRKY domain
PfamPF031066.8E-26101159IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MDAHRSNKEK AEALQEDLEC MRKENESLRF MLEVMTRKCN IIESHLRQRN LEYMGIDLNH  60
QFEANKRART SINEFSLATN KSQTSQFLVR TNSKDSTLVV KDGYQWRKYG QKVTKDNPSP  120
RAYFRCSMAP GCPVKKKVQR SKDDKSVLIA TYEGQHNHDS HDSHAHFSPS INTSAKGAEH  180
INFVPAESTP TFTPSPQPIT LDLTLSGSNN QENSSGGLDG NSVSDRGFNG KYNKIEDFVA  240
SLTKDKNFTV SLAAAVARCV TNQPKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22991591372WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015884033.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884033.10.0probable WRKY transcription factor 40
TrEMBLA0A2N9H6034e-80A0A2N9H603_FAGSY; Uncharacterized protein
STRINGXP_008347492.11e-79(Malus domestica)
STRINGXP_008357270.11e-79(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73983044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-43WRKY DNA-binding protein 40