PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015875767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | FAR1 | ||||||||
Protein Properties | Length: 247aa MW: 28151.7 Da PI: 7.2832 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.5 | 1.7e-26 | 80 | 167 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++Y+ +vGF +r+++ ++sk +g+i+ rt+vC+keg+r++ + + +++ ++r+ tr+gCka+l ++k ++gkw vtk+ +eH+H+la XP_015875767.1 80 FYSAYGMRVGFVTRMNYLSRSKLDGTIIGRTLVCNKEGYRKSYRCD-KQSTKPRTPTRVGCKAMLSIRKLSTGKWIVTKFIKEHTHSLA 167 9*****************************************9999.9**************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.8E-24 | 80 | 167 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MDSELGEDIH DGVLDNSTDI DHELGNDTVT VGSSSIEETS HVGQNEEMTQ KSSKEKSNVV 60 EGDEPYVGQE FDTEEAAHAF YSAYGMRVGF VTRMNYLSRS KLDGTIIGRT LVCNKEGYRK 120 SYRCDKQSTK PRTPTRVGCK AMLSIRKLST GKWIVTKFIK EHTHSLAARY SQNVLISHQV 180 PNETMKIQEL TQQLLLERKR SASFRKVIDL LFNHIEEHTQ DLSRKVQCMV DKVKQIESDG 240 KDYKNLR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015875767.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875767.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
TrEMBL | A0A2I4FBJ8 | 1e-120 | A0A2I4FBJ8_JUGRE; protein FAR1-RELATED SEQUENCE 12-like | ||||
STRING | EOY09724 | 1e-109 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 8e-68 | FAR1 family protein |