PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015875767.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 247aa    MW: 28151.7 Da    PI: 7.2832
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015875767.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR184.51.7e-2680167290
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     fY++Y+ +vGF +r+++ ++sk +g+i+ rt+vC+keg+r++ + + +++ ++r+ tr+gCka+l ++k ++gkw vtk+ +eH+H+la
  XP_015875767.1  80 FYSAYGMRVGFVTRMNYLSRSKLDGTIIGRTLVCNKEGYRKSYRCD-KQSTKPRTPTRVGCKAMLSIRKLSTGKWIVTKFIKEHTHSLA 167
                     9*****************************************9999.9**************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-2480167IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDSELGEDIH DGVLDNSTDI DHELGNDTVT VGSSSIEETS HVGQNEEMTQ KSSKEKSNVV  60
EGDEPYVGQE FDTEEAAHAF YSAYGMRVGF VTRMNYLSRS KLDGTIIGRT LVCNKEGYRK  120
SYRCDKQSTK PRTPTRVGCK AMLSIRKLST GKWIVTKFIK EHTHSLAARY SQNVLISHQV  180
PNETMKIQEL TQQLLLERKR SASFRKVIDL LFNHIEEHTQ DLSRKVQCMV DKVKQIESDG  240
KDYKNLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015875767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875767.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A2I4FBJ81e-120A0A2I4FBJ8_JUGRE; protein FAR1-RELATED SEQUENCE 12-like
STRINGEOY097241e-109(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24533072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.28e-68FAR1 family protein