PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015874380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 216aa MW: 23315.5 Da PI: 6.083 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.1 | 2.6e-42 | 50 | 149 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++h++FGasn++kll++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la XP_015874380.1 50 PCAACKILRRRCADKCVLAPYFPPTEPTKFTIAHRVFGASNIIKLLQELPESQRADAVTSMVYEAGARIRDPVYGCAGAICQLQKQVNELQAQLA 144 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_015874380.1 145 KAQAE 149 99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.011 | 49 | 150 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-42 | 50 | 147 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 216 aa Download sequence Send to blast |
MNMDYSSDAN TTTITNTSSL SPSSSSSPPP PPHPPPPSSP PSPPPVVVSP CAACKILRRR 60 CADKCVLAPY FPPTEPTKFT IAHRVFGASN IIKLLQELPE SQRADAVTSM VYEAGARIRD 120 PVYGCAGAIC QLQKQVNELQ AQLAKAQAEV VNMQCQHANL VALICMEMAQ SQQGLPQQTL 180 ADSFIATSPH SNQTNMGFLE DNNNNNIGPL WETLWT |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-43 | 45 | 155 | 6 | 116 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-43 | 45 | 155 | 6 | 116 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015874380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015874380.1 | 1e-159 | LOB domain-containing protein 11-like | ||||
Swissprot | Q9SK08 | 3e-75 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | A0A251NML0 | 5e-95 | A0A251NML0_PRUPE; Uncharacterized protein | ||||
TrEMBL | M5W070 | 4e-95 | M5W070_PRUPE; Uncharacterized protein | ||||
STRING | XP_008224697.1 | 1e-97 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1303 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-67 | LOB domain-containing protein 11 |