PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015873353.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 537aa MW: 60618.9 Da PI: 6.8209 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00073 | 73 | 93 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk Fs+ L H r H XP_015873353.1 73 CEYCGKGFSSGKALGGHKRYH 93 **************9999988 PP | |||||||
2 | zf-C2H2 | 13.5 | 0.00021 | 150 | 171 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C C k F++k +L H+r+H XP_015873353.1 150 TCCLCQKEFPSKKSLFGHMRSH 171 7********************9 PP | |||||||
3 | zf-C2H2 | 13.6 | 0.00019 | 411 | 433 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ CgksF++ L H ++H XP_015873353.1 411 FKCSSCGKSFPTFQALGGHRSSH 433 89***********9999999988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.69E-5 | 67 | 95 | No hit | No description |
SMART | SM00355 | 1.4 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.616 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.8E-8 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 6.8E-4 | 73 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.085 | 149 | 171 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.037 | 149 | 176 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.17E-7 | 150 | 171 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 151 | 171 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.5E-5 | 151 | 173 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.17E-7 | 406 | 433 | No hit | No description |
SMART | SM00355 | 0.082 | 411 | 433 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.967 | 411 | 438 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.7E-10 | 411 | 434 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 413 | 433 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 537 aa Download sequence Send to blast |
MDEDRENQIE DHKQQQLKLK IIKSSDWNIG DDERKPAVIK TEIDDDNEEN QIDQVHHHHH 60 EISTTPPPLP RICEYCGKGF SSGKALGGHK RYHIQEARKY GLIIPRKTMK LKLKKHKVLY 120 DDVHHGTSSP SPSSAKINSN SQQEEKEKST CCLCQKEFPS KKSLFGHMRS HRDRDWRGIQ 180 PPPMMMSSDR SRSSSCSPPM AAAVATEMKQ QQLDHDDVED EAEDYYNQIE NTSLEFTESR 240 TFEPVEVLRT WCKTDKRGRK SIGDQVAAER LVSLSLGEQE QGEEQQQSLM MMKKIGSKIS 300 GYDSDDSYWL REDQELELDH HVDKQQHQHQ QQWSVNVNVK KNVDYGSYQG RQHQPNDYDA 360 VSNKRKMTTA KKDKFSYSEK RPRKSGGGVL EVNSLDGGGG GGVRKKPKTS FKCSSCGKSF 420 PTFQALGGHR SSHNKDKHTN HPHTLAEDSA EVGIDGRAGA GNNKVQVKVD NVTSKSMYNE 480 KIGNGGKSSS SQVDDQDQAA LMTSEASQSS HTGPRKVLDF DLNETYVMED DEEEGAN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015873353.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015873353.1 | 0.0 | uncharacterized protein LOC107410437 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9737 | 24 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56200.1 | 5e-16 | C2H2 family protein |