PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872651.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family ERF
Protein Properties Length: 204aa    MW: 22587.1 Da    PI: 6.7929
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872651.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.3e-184291255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++GVr ++ +gr+v+eIr p   gk++r++lg+fg++e+Aa+a++ a+ +l+g
  XP_015872651.1 42 PFRGVRKRS-WGRYVSEIRLP---GKKTRVWLGSFGSPEMAARAYDSAAFYLKG 91
                    69****888.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.7584299IPR001471AP2/ERF domain
SMARTSM003801.8E-3342105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-2843100IPR001471AP2/ERF domain
PRINTSPR003679.2E-114354IPR001471AP2/ERF domain
PfamPF008471.5E-114391IPR001471AP2/ERF domain
CDDcd000182.60E-2743101No hitNo description
SuperFamilySSF541717.19E-1943100IPR016177DNA-binding domain
PRINTSPR003679.2E-1181101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSITEDPAAQ FHPTKTHSQS LSKRASNSTT TTTTAARQHD TPFRGVRKRS WGRYVSEIRL  60
PGKKTRVWLG SFGSPEMAAR AYDSAAFYLK GNSASLNFPD LAESLPRPES SSRRDIQSAA  120
AKAALQPKES RSIVNSSRES VSRELTDLST EYWWGLDFEG GTVSFDEVKE APLLSPFRFD  180
SVSGEMCEVG QFMDDGDLFL QSCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-144399360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-144399663ATERF1
3gcc_A1e-144399663ATERF1
5wx9_A1e-1443991572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872651.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015870745.11e-149ethylene-responsive transcription factor ERF039-like
RefseqXP_015870792.11e-149ethylene-responsive transcription factor ERF039-like
RefseqXP_015870839.11e-149ethylene-responsive transcription factor ERF039-like
RefseqXP_015872651.11e-149ethylene-responsive transcription factor ERF039-like
TrEMBLA0A2I4FQW43e-60A0A2I4FQW4_JUGRE; ethylene-responsive transcription factor ERF037-like
STRINGXP_010252352.16e-60(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137561621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25810.12e-28ERF family protein