PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015872573.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family FAR1
Protein Properties Length: 564aa    MW: 65276.1 Da    PI: 7.021
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015872573.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.52.6e-2472163190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     ++Y+++A++ GFs+rk++s++s+  g i++r+fvC+++g+++++kk+++++ r+r++ r+gC+akl ++ke      +w+v+++++ HnHel 
  XP_015872573.1  72 EYYSNFARKNGFSIRKARSTESQSLG-IYRRDFVCYRSGFNQPRKKANVEHPRERKSVRCGCDAKLYLTKEIvdgVTQWYVSQFSNVHNHELL 163
                     69********************8888.******************************************998766789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2272163IPR004330FAR1 DNA binding domain
PfamPF105511.2E-23295388IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MAMKPSNNIW IRRQQCPCGD WKCYIKYEGD DQVSVSSQHV KTEMIPSSSS SSEAVFTPYV  60
GQIFKSDDDA FEYYSNFARK NGFSIRKARS TESQSLGIYR RDFVCYRSGF NQPRKKANVE  120
HPRERKSVRC GCDAKLYLTK EIVDGVTQWY VSQFSNVHNH ELLEDDQVRL LPAYRKIQEA  180
DQERILLLSK AGFPVNRIVK VLELEKGVQP GHLPFIEKDV RNFVRTCKKT VQENDALLSE  240
KRENDTLEFL ETCKAMAERD PDFIYDYTTD ENEKVENIAW SYGNSVRAFT VFGDVVSFDT  300
TYRSITYGLL LGVWFGIDSH GKAILFGCVL LQDESSHSLS WALQTFVRFM RGRHPQTILT  360
DIDSGLRDAI VSELPNTKHV ICIWHVLSKI SSWFSLPLGS KYADFKAEFD MLCHLESIED  420
FEHQWNLLVA RFGLVSDKHV ALLYSYRTFW PFSYIRSYFV ARMVTAEFSQ SLESFFKRIL  480
GTQTCLQAFF EQVTNAANFG NQTRESMQYS HIKTCMPIEE HARTVLTPYA FHVLQHEIVL  540
SMQYETTEMA SGSHLVRHYK KMDG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015872573.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015900729.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_015900730.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A2I4DP380.0A0A2I4DP38_JUGRE; Uncharacterized protein
STRINGXP_006469463.10.0(Citrus sinensis)
STRINGXP_006447802.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]