PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871773.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | C2H2 | ||||||||
Protein Properties | Length: 310aa MW: 34273.6 Da PI: 6.3012 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.2 | 0.00026 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_015871773.1 132 FSCNYCQRKFYSSQALGGHQNAH 154 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.51E-6 | 128 | 159 | No hit | No description |
PROSITE profile | PS50157 | 11.427 | 132 | 159 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 134 | 154 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MKIQLPEPCP SESSSIISVS EALPPSSIQV SMDIQKQRNQ PEEEEVEEQQ EQDGDGDEEE 60 KVKKAEEGDH EDHNKHQEES KNSHLVLDLS LSNEDSKPEL NLIDSFESNS SRNSSDTDTH 120 PHQGNETEPR VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKRGHKIGIA STAFGFPTSL 180 PHRYSSIASL PLHGSFNKSL GIQVHSMIHK PAYQPNTNTV ATSHLYGRNG WLRFPIDQQP 240 AIGRHVLENL HVGTALGSSS SSTGGAARFE TARKFSQATE GTGGGFCWNS VGFSKTKQDE 300 LQKLDLSLKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871773.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015871773.1 | 0.0 | zinc finger protein 1 | ||||
TrEMBL | A5BQW1 | 1e-100 | A5BQW1_VITVI; Uncharacterized protein | ||||
STRING | VIT_09s0002g09080.t01 | 1e-100 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1439 | 31 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80730.1 | 1e-40 | zinc-finger protein 1 |