PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_015871696.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 568aa MW: 62710.6 Da PI: 6.4675 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66 | 4.9e-21 | 141 | 196 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k XP_015871696.1 141 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 196 688999***********************************************999 PP | |||||||
2 | START | 188.5 | 3.3e-59 | 357 | 568 | 1 | 192 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 ela++a++elvk+a+ +ep+W++s e++n++e+l++f++ + + +e++r++gvv+ ++ lve+l+d+ +W e+++ + +t+ XP_015871696.1 357 ELALAAMDELVKMAQTDEPLWMRSLeggrEILNREEYLRTFSPCIGlkpngFVSETSRETGVVIINSLALVETLMDSH-RWAEMFPcviaRTSTT 450 5899**************************************99999***9***************************.**************** PP EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwveh 169 +vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + +s+ +++lpSg+++++++ng+skvtwveh XP_015871696.1 451 DVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGaPPSFLHCRRLPSGCVVQDMPNGYSKVTWVEH 545 *********************************************************99999999****************************** PP EE--SSXXHHHHHHHHHHHHHHH CS START 170 vdlkgrlphwllrslvksglaeg 192 ++++++l+h+l+r+l++sg+ +g XP_015871696.1 546 AEYDESLVHQLYRPLLSSGMGFG 568 ********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.56E-21 | 123 | 198 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 128 | 198 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.216 | 138 | 198 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-17 | 139 | 202 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.97E-18 | 140 | 198 | No hit | No description |
Pfam | PF00046 | 1.3E-18 | 141 | 196 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 173 | 196 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.526 | 348 | 568 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.37E-28 | 349 | 565 | No hit | No description |
CDD | cd08875 | 7.38E-117 | 352 | 568 | No hit | No description |
SMART | SM00234 | 4.1E-38 | 357 | 568 | IPR002913 | START domain |
Pfam | PF01852 | 5.5E-51 | 357 | 568 | IPR002913 | START domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
MSFGGFLENS TGGGGGARIV ADISYTTTST NSPNSNTINN NNNHNMPSTT ALAQPRLVTQ 60 SLTKSMFNSP GLSLALQTNT NIDGQGDHHH HHHQVTRMGE NFETNVGRRS REEEHESRSG 120 SDNMDGGSGD DQDAADNPPR KKRYHRHTPQ QIQELEALFK ECPHPDEKQR LELSRRLCLE 180 TRQVKFWFQN RRTQMKTQLE RHENSLLRQE NDKLRAENMS IRDAMRNPIC SNCGGPAIIG 240 EISLEEQHLR IENARLKDEL ERVCALAGKF LGRPISSLAT SIAPPLPSST LELGVGTNGF 300 GNLSTVATTM PLGPDYGSGG GISGSLTVVP PLQQPPTTTR QAASVLDRSM ERSMFLELAL 360 AAMDELVKMA QTDEPLWMRS LEGGREILNR EEYLRTFSPC IGLKPNGFVS ETSRETGVVI 420 INSLALVETL MDSHRWAEMF PCVIARTSTT DVISSGMGGT RNGALQLMHA ELQVLSPLVP 480 VREVNFLRFC KQHAEGVWAV VDVSIDTIRE TSGAPPSFLH CRRLPSGCVV QDMPNGYSKV 540 TWVEHAEYDE SLVHQLYRPL LSSGMGFG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_015871696.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015888672.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2-like | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | M5XQZ7 | 0.0 | M5XQZ7_PRUPE; Uncharacterized protein | ||||
STRING | EMJ21455 | 0.0 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.2 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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