PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_015868740.1

Organism

Ziziphus jujuba

Taxonomic ID

326968

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus

Family

LBD

Protein Properties

Length: 316aa MW: 34976 Da PI: 6.4263

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_015868740.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.4	2.4e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk++rrkC+++Cv+apyfp +qp+kf+nvhk+FGasnv kll++l+ ++reda++sl+yeA+ar+rdPvyG+vg+i+ lq++l++++++l XP_015868740.1 7 PCAACKLQRRKCTQECVFAPYFPPDQPQKFENVHKVFGASNVAKLLNELNANQREDAVNSLAYEADARLRDPVYGCVGLISILQHKLKEVQSDLY 101 7********************************************************************************************99 PP DUF260 96 llkee 100 +k+e XP_015868740.1 102 NAKKE 106 98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.05	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.0E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009954	Biological Process	proximal/distal pattern formation
GO:0009965	Biological Process	leaf morphogenesis
GO:0048441	Biological Process	petal development

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSPSNSPCAA CKLQRRKCTQ ECVFAPYFPP DQPQKFENVH KVFGASNVAK LLNELNANQR 60 EDAVNSLAYE ADARLRDPVY GCVGLISILQ HKLKEVQSDL YNAKKELATY LGPQALHQIL 120 QPPTYLPQTH PGPSSSSVLP YNMSPMMGIP TGPSPSGQLV ICDPLQQQHQ TQQIFEAQQL 180 AAAVAAREQQ EMFRTSFEQK QALHQQQQQT QQPQDLLRFN SGGFDSASGS VTATGFNQMT 240 AAAMSPSLAL GNFDLSYHIQ PQQPEHHNPH HTQLQAQILL PPQEPQVQQQ QSQQTQQSQQ 300 QQTDQGEEGR GVGQTC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-47	4	127	8	127	LOB family transfactor Ramosa2.1
5ly0_B	4e-47	4	127	8	127	LOB family transfactor Ramosa2.1
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Functional Description ? help Back to Top
Source	Description
UniProt	Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP. {ECO:0000269\|PubMed:12787254, ECO:0000269\|PubMed:15821980}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_015868740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015868740.1	0.0	LOB domain-containing protein 36-like
Refseq	XP_015890048.1	0.0	LOB domain-containing protein 36-like
Swissprot	Q9FKZ3	4e-86	LBD36_ARATH; LOB domain-containing protein 36
TrEMBL	A0A0B0PS92	1e-122	A0A0B0PS92_GOSAR; LOB domain-containing 36-like protein
STRING	cassava4.1_025228m	1e-118	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2353	34	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	5e-80	ASYMMETRIC LEAVES 2-like 1

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310] Wang Z,Wang Y,Kohalmi SE,Amyot L,Hannoufa A SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 2 controls floral organ development and plant fertility by activating ASYMMETRIC LEAVES 2 in Arabidopsis thaliana. Plant Mol. Biol., 2016. 92(6): p. 661-674 [PMID:27605094]