PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_015868603.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 26783.7 Da PI: 6.3517 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.6e-17 | 32 | 82 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g++v+eIr p ++++r++lg++ t+e Aa+a++aa ++l+g XP_015868603.1 32 KKYKGVRMRS-WGSYVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 82 59*****998.**********9...336************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.9E-10 | 33 | 82 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.3E-29 | 33 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-19 | 33 | 92 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 20.719 | 33 | 90 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-33 | 33 | 96 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.88E-19 | 34 | 92 | No hit | No description |
PRINTS | PR00367 | 7.4E-8 | 34 | 45 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-8 | 56 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
MVKTTIEQKK IQKEAPKAMS SSSSSGSNNN KKKYKGVRMR SWGSYVSEIR APNQKTRIWL 60 GSYSTPEAAA RAYDAALLCL KGSSANLNFP ISPSSFHHIP PQDTILSPKY IQRVAAAAAN 120 SFIDNNAPST ATSAPSSPPQ PHSSSFSASS SSSSLVSSPS LSSSSPSDQL DDDVSLIGTY 180 MRGITYDDHH DQQGNIELMA MMESWYNFDN LQSPKYVDQM LNGALFGPSL IDDLYEESDI 240 SLWSFC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-14 | 32 | 95 | 4 | 68 | ATERF1 |
3gcc_A | 1e-14 | 32 | 95 | 4 | 68 | ATERF1 |
5wx9_A | 2e-14 | 23 | 90 | 4 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_015868603.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015868603.1 | 0.0 | ethylene-responsive transcription factor ERF014 | ||||
Swissprot | Q9SFE4 | 1e-46 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | A0A151RKQ9 | 5e-72 | A0A151RKQ9_CAJCA; Ethylene-responsive transcription factor ERF012 family | ||||
STRING | XP_007141071.1 | 1e-65 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4798 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G21910.1 | 7e-31 | ERF family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|