PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013637084.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 649aa    MW: 72209.8 Da    PI: 6.6394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013637084.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.3e-13334380455
                     HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YIk+Lq
  XP_013637084.1 334 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAISYIKELQ 380
                     799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.8E-5150231IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.93E-18329390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.536330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.61E-15333384No hitNo description
PfamPF000104.0E-11334380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17334390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-17336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.1300.102.6E-4599646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MNTSDVVGWE DEDTRSMVSA VLGNSASDFL TANSNSNQNL FLVMGTDDGL NEKLSRLVDS  60
PNPESFSWNY AVFWQQTVSR SGQQVLAWGD GCCREPKEEE SMAYNLEEEM RWQYMRKRVL  120
QKLHRMFGGS DEDDYALSLE NVTATEMFFL ASMYFFFNHG EGGPGRCFAS GRHVWLSDAV  180
GSDYCFRSFM VKSAGIRTVV MVPTDAGVLE LGSVWSLPEN VELVRSVQGL FARRVKPPNM  240
SGGKIHKLFG QELNSSHHNN NGSTIGYTSQ EIDVKVQENV NMVVVDDKNH KVMKTSCNEK  300
RPASLLPEGV SVVEEKRPRK RGRKPANGRE EALNHVEAER QRREKLNQRF YALRAVVPNI  360
SKMDKASLLG DAISYIKELQ ERVKIIEAEA VSESNTMTTK GEESQEVVDV QAGEEEVVVR  420
VVSPLESHPA SRIIQAMRNS EVVSVMESKL SLAEETLFHT FVVKNNNGSD PLTKEKVIAA  480
AYPETSLTQQ LLLPSSSSQV SDPKIKSASD AAMSLRRSLL GLHRQTHNLS LSKSSPFSIT  540
NISSPSAAVI GREISSIPFS LTQKLKPDSS NLVADRSRGQ SQLARLPSSR GYSNASLVRK  600
IPVLFHINAG MEEVLADYVH QELTRNLMVI SLGLFQIIVI KDVVVFLFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-27328397271Transcription factor MYC2
5gnj_B7e-27328397271Transcription factor MYC2
5gnj_E7e-27328397271Transcription factor MYC2
5gnj_F7e-27328397271Transcription factor MYC2
5gnj_G7e-27328397271Transcription factor MYC2
5gnj_I7e-27328397271Transcription factor MYC2
5gnj_M7e-27328397271Transcription factor MYC2
5gnj_N7e-27328397271Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315323KRPRKRGRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In seedlings, mainly expressed in root tips, cotyledons, hypocotyls, and leaves, as well as its guard cells. In adult plant, detectable in stems, flowers, and siliques. {ECO:0000269|PubMed:17828375}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Regulates positively abscisic acid (ABA) response. Confers drought tolerance and sensitivity to ABA. {ECO:0000269|PubMed:17828375}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013637084.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently by ABA and polyethylene glycol (PEG). {ECO:0000269|PubMed:17828375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013637084.10.0PREDICTED: transcription factor ABA-INDUCIBLE bHLH-TYPE-like isoform X1
SwissprotQ9ZPY80.0AIB_ARATH; Transcription factor ABA-INDUCIBLE bHLH-TYPE
TrEMBLA0A0D3BNS80.0A0A0D3BNS8_BRAOL; Uncharacterized protein
STRINGBo4g008180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37582759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46510.10.0ABA-inducible BHLH-type transcription factor
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
    Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
    Plant Signal Behav, 2014. 9(1): p. e27639
    [PMID:24394987]
  3. Fonseca S, et al.
    bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
    PLoS ONE, 2014. 9(1): p. e86182
    [PMID:24465948]
  4. Thatcher LF, et al.
    Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum.
    J. Exp. Bot., 2016. 67(8): p. 2367-86
    [PMID:26896849]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]