PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013636341.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 315aa    MW: 34951.1 Da    PI: 6.656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013636341.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.45.9e-09183230455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  XP_013636341.1 183 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 230
                     79************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-15177247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.26E-9177234No hitNo description
PROSITE profilePS5088814.634179229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-15179246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6183230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8185235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNHLNQMFGV SSGAGPYRES PMTGLESINF SDEIQQLAAT LPPENTGSFT ALLEMPATQA  60
VELFTSSSQA AGNIAPPTLH PFRRLNLPPD LSVIAAEQNG NFSGESVAPS SFSGRVKPEP  120
DETDSSQRFV SHPTVENQNR NKRKERGKKK VKSSMKKTKS SEEEAEKLPY VHVRARRGQA  180
TDNHSLAERA RREKINARMK LLQELVPGCD KIQGTALVLD EIINHVQSLQ HQVEMLSMRL  240
AAVNPRTDFN LDSILASQNG SLMDGSFNGE SYHQLQQWSL DGYHQPAWGR EEDHHEGNFL  300
MGSATLHPNQ VKMEL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013636341.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1766341e-167AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
GenBankAY0654111e-167AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBankAY0965211e-167AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636341.10.0PREDICTED: transcription factor bHLH48
SwissprotQ8VZ021e-140BH048_ARATH; Transcription factor bHLH48
TrEMBLA0A0D3BPA30.0A0A0D3BPA3_BRAOL; Uncharacterized protein
STRINGBo4g015870.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42300.11e-134bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]