PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013624962.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

EIL

Protein Properties

Length: 367aa MW: 42921.7 Da PI: 8.3856

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013624962.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	273.9	6.8e-84	33	284	3	285
XXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 3 lkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWke 97 l+kr w++ m+lkrlker+k++ e+ eq +s k M+k+mevcnaqGfvYgiipe+gkp +as +L++WWk+ XP_013624962.1 33 LEKRIWRQGMRLKRLKERRKNK----ER---------DDEQ----LIS-------KCMFKMMEVCNAQGFVYGIIPENGKPIISASHNLQEWWKD 103 5666666666666666666652....22.........1222....344.......55************************************ PP XXXXXXXXXXXXXXX.XXXXXXXXXXXXX.....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS EIN3 98 kvefdrngpaaisky.qaknlilsgessl.qtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190 kv+fd+ngp+ai+k+ +++n++ +++++ +++++ +++ l +lqD tlg LLsalm hcdppqrrfp ek v pPWWPtG+e ww+ kdq XP_013624962.1 104 KVRFDLNGPIAIAKHqESNNMVCESNEEGnNIANQLSQNFLRDLQDPTLGWLLSALMPHCDPPQRRFPFEKRVRPPWWPTGQEYWWP-----KDQ 193 ***********666666665544444999**************************************************.....* PP -..-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 191 g.tppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqkedv 284 g +ppykkphdlkk wk++vLt+vikh+sp +re + q+k+l +km+ ke++++++v+ qee+ ++ + ++ ++ + +v +++ +++++ XP_013624962.1 194 GpAPPYKKPHDLKKSWKIGVLTSVIKHLSPG--TMREIVTQTKSLWNKMTTKEKDIWFNVIDQEEASKHEKMLNT---SNFEINVGFQDMNSREN 283 9************************98..9****************************98543333222...22333444444444443 PP X CS EIN3 285 e 285 + XP_013624962.1 284 N 284 3 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	5.2E-82	60	256	No hit	No description
Gene3D	G3DSA:1.10.3180.10	2.1E-50	138	263	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	3.92E-45	142	258	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence Send to blast
MGMRSNMGLF FSQPQPIIDD DGHTDDEFDV DKLEKRIWRQ GMRLKRLKER RKNKERDDEQ 60 LISKCMFKMM EVCNAQGFVY GIIPENGKPI ISASHNLQEW WKDKVRFDLN GPIAIAKHQE 120 SNNMVCESNE EGNNIANQLS QNFLRDLQDP TLGWLLSALM PHCDPPQRRF PFEKRVRPPW 180 WPTGQEYWWP KDQGPAPPYK KPHDLKKSWK IGVLTSVIKH LSPGTMREIV TQTKSLWNKM 240 TTKEKDIWFN VIDQEEASKH EKMLNTSNFE INVGFQDMNS RENNQPICRN RNGLFASSKF 300 HVMPMHDRNI NGNQSCLVEG NQSVNLQPEA QNHQEHWHFG RSEGNIVERS SVEDLMKLSI 360 NNNKRTV

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence Send to blast

MGMRSNMGLF FSQPQPIIDD DGHTDDEFDV DKLEKRIWRQ GMRLKRLKER RKNKERDDEQ  60
LISKCMFKMM EVCNAQGFVY GIIPENGKPI ISASHNLQEW WKDKVRFDLN GPIAIAKHQE  120
SNNMVCESNE EGNNIANQLS QNFLRDLQDP TLGWLLSALM PHCDPPQRRF PFEKRVRPPW  180
WPTGQEYWWP KDQGPAPPYK KPHDLKKSWK IGVLTSVIKH LSPGTMREIV TQTKSLWNKM  240
TTKEKDIWFN VIDQEEASKH EKMLNTSNFE INVGFQDMNS RENNQPICRN RNGLFASSKF  300
HVMPMHDRNI NGNQSCLVEG NQSVNLQPEA QNHQEHWHFG RSEGNIVERS SVEDLMKLSI  360
NNNKRTV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	1e-45	140	261	2	129	Protein ETHYLENE INSENSITIVE 3
4zds_B	1e-45	140	261	2	129	Protein ETHYLENE INSENSITIVE 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013624962.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013624962.1	0.0	PREDICTED: protein ETHYLENE INSENSITIVE 3-like
Swissprot	Q9SLH0	3e-96	EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBL	A0A0D3BMK0	0.0	A0A0D3BMK0_BRAOL; Uncharacterized protein
STRING	Bo3g179880.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18788	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	1e-90	ETHYLENE-INSENSITIVE3-like 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Poulios S,Vlachonasios KE Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(3): p. 905-18 [PMID:26596766] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106]