PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013619395.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Protein Properties

Length: 291aa MW: 33098.2 Da PI: 4.4863

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013619395.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.6	5.3e-14	15	101	7	98
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 ++dv+ s+rlvlp ++ ++ ++++ ++t +l+ ++g+ W vk ++++ + +++GW+ F +n+ +gDf+ F++dg+++f +v++fr XP_013619395.1 15 SKDVSLSQRLVLPSDYR-QY-YPTPLPQTAVLRKPEGNFWAVKW--GISPEEeISFGDGWSTFIAENDPLDGDFLQFSYDGSRSF--MVSIFR 101 6799999******96.55.3566999************..77777779*********************998888..**98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.43E-16	5	101	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	8.6E-16	7	101	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.04E-12	7	101	No hit	No description
SMART	SM01019	3.9E-11	9	103	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.084	9	103	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.0E-12	10	102	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.7E-4	195	278	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.85E-5	195	278	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MVFTPYPDFL IIYNSKDVSL SQRLVLPSDY RQYYPTPLPQ TAVLRKPEGN FWAVKWGISP 60 EEEISFGDGW STFIAENDPL DGDFLQFSYD GSRSFMVSIF RGGLPVKPKA PVTIQDISDD 120 DDEDKTAGDD GNEKKEEDYD QNMIISLSLG SSDEEYDADK TVCEVNKAHR TLERGSSSQR 180 IRAQSIGDPE MYLDDPKNPC FIATSSSCRR MLVIAMQVIK DYDLKFDGTI KFIDGFGELE 240 GKIGNWKDRV VVYPWQEIYQ RNHAKPGDVI ICEILREGDV VRSIKAHFVK K

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013619395.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013619395.1	0.0	PREDICTED: B3 domain-containing protein At5g57720
Swissprot	Q9FHH1	1e-110	Y5772_ARATH; B3 domain-containing protein At5g57720
TrEMBL	A0A0D3ALD8	0.0	A0A0D3ALD8_BRAOL; Uncharacterized protein
STRING	Bo2g029120.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13797	17	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57720.1	1e-104	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]