PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013617951.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 267aa MW: 29557.7 Da PI: 5.661 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.3 | 0.00024 | 3 | 20 | 6 | 23 |
TTEEESSHHHHHHHHHHT CS zf-C2H2 6 CgksFsrksnLkrHirtH 23 C ksFs+ s+L+ H+++H XP_013617951.1 3 CEKSFSNGSTLRGHMMSH 20 ****************99 PP | |||||||
2 | zf-C2H2 | 14.8 | 8.5e-05 | 243 | 265 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg+ F + L H++tH XP_013617951.1 243 HQCGVCGREFESGQALGGHMKTH 265 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 110 | 1 | 20 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.95E-8 | 190 | 265 | No hit | No description |
PROSITE profile | PS50157 | 10.554 | 192 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.055 | 192 | 214 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 3.9E-11 | 193 | 215 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 194 | 214 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-10 | 242 | 266 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.138 | 243 | 267 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.021 | 243 | 265 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 245 | 265 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MRCEKSFSNG STLRGHMMSH SLIRSAPNAE SASGSTLPSL ETSNNGTVLI RSNHTSEVGE 60 PDLKRDEGAQ KIKGKRKMIV DEADSTGSGS PLTAVEEAGL ILVAMSKGQR PENSQNWNAI 120 DRLLATPNGK EEYYQKDLDS DDDNKEVKYK SVAELLTQNV ETQTEDSDED DEVNDADETN 180 LVTREKKCKK EFMCDVCGKV FGSYQALGGH RTSHKCKRLK ICDKNDQDGE LVPNKKNDQD 240 RRHQCGVCGR EFESGQALGG HMKTHYI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013617951.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232542 | 0.0 | AC232542.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH005L20, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013617951.1 | 0.0 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | A0A0D3AY72 | 0.0 | A0A0D3AY72_BRAOL; Uncharacterized protein | ||||
STRING | Bo2g161550.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14171 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61470.1 | 5e-40 | C2H2-like zinc finger protein |