PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013616777.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 362aa    MW: 41244.3 Da    PI: 5.2597
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013616777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.51.9e-34291532128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     +pGfrF Ptdeel+++yLk+kv+gk++ l + i evd+yk  +P+dLp  +++k++e+ w+fF+  +k y+++  + r+t++gyW++ g  k+++
  XP_013616777.1  29 APGFRFCPTDEELISYYLKRKVQGKPIAL-DPIGEVDVYKQeDPSDLPgrSRIKTKERAWFFFTILEK-YEKSGYAMRSTNNGYWRQRGVGKKIK 121
                     69*************************99.99*******9868*****64488889999999999866.7777889999**************** PP

             NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +  +g++vg  k Lvfy     + ++t+Wv+hey+l
  XP_013616777.1 122 RGgDGQVVGNVKRLVFY----TNNQSTNWVIHEYQL 153
                     9878899**********....344689*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-3928171IPR003441NAC domain
PROSITE profilePS5100538.53728174IPR003441NAC domain
PfamPF023651.1E-2330153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MVRDFMSTDR GLPAASEAVL RTATGRLTAP GFRFCPTDEE LISYYLKRKV QGKPIALDPI  60
GEVDVYKQED PSDLPGRSRI KTKERAWFFF TILEKYEKSG YAMRSTNNGY WRQRGVGKKI  120
KRGGDGQVVG NVKRLVFYTN NQSTNWVIHE YQLVDNDGHG LKTNAYVLCR LSDSSGSINA  180
PFSEQEWDDA DNEKIQQESN SRSMDLFDLN ELPREFEIGD DDSKAVDQDD NYDACLLPCV  240
LNKEAPLPFI RYRRKRQLDS DNSIQTTPKT TSGSIPYVAA LLERSEPAPV DTTMVVPTSS  300
YTEELIKDLQ KEKQQIAVER KRYKLEMTNA ETTISDLVGK NDALRMEIEE LKKKNSNKEQ  360
CS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-243017317167Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013616777.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893930.0AC189393.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB054O10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013616777.10.0PREDICTED: NAC domain-containing protein 53-like
TrEMBLA0A0D3AIJ80.0A0A0D3AIJ8_BRAOL; Uncharacterized protein
STRINGBo2g010310.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1873667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10480.24e-71NAC domain containing protein 50