PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013613101.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 561aa    MW: 62876.6 Da    PI: 4.2844
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013613101.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.7e-5391361128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     l+pGfrFhPtdeelv +yLk+kv +k++++ ++i+ +diyk+ePwdLp k k+k+++ ewyfFs  dkky++g+++nrat++gyWk+tgkd+e+ 
  XP_013613101.1   9 LAPGFRFHPTDEELVRYYLKRKVCNKPFNF-DAISVTDIYKSEPWDLPdKsKLKSRDLEWYFFSMLDKKYSNGSKTNRATEKGYWKTTGKDREIR 102
                     579**************************9.99**************95347777888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++++ g+kktLv++kgrap+ge+t+Wvmheyrl
  XP_013613101.1 103 N-GSRAAGMKKTLVYHKGRAPRGERTNWVMHEYRL 136
                     9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.68E-617159IPR003441NAC domain
PROSITE profilePS5100557.9469159IPR003441NAC domain
PfamPF023651.0E-2711136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MGRGSATSLA PGFRFHPTDE ELVRYYLKRK VCNKPFNFDA ISVTDIYKSE PWDLPDKSKL  60
KSRDLEWYFF SMLDKKYSNG SKTNRATEKG YWKTTGKDRE IRNGSRAAGM KKTLVYHKGR  120
APRGERTNWV MHEYRLTDEE LKRAGAPQDA FVLCRIFQKS GTGPKNGEQY GAPYLEEEWE  180
EDKMTFVPEQ DALSEGLAVD DDVYVDIDEI DEKPENLVVY DAIPVQTNYC HGDSSNNAES  240
GNCEDSGNYI QPGNYAVDSG GYIKQPTETF EEDQKPIIRD CCIQPCSLYP NEQIGCGVQD  300
QHEENLETSN NNDFVADPCY SDIPIETNYL PDEPFMDPSN NLQLCDDLYL ETNDLSGGGL  360
QDDFNFEDYL NFFDDEDAQN LTLGVSQLLG SQDAPPEQES LDQKQPSPEE LEKEVVVEKK  420
ESGEGSSSKQ DADVTDFDSD SKYPFLKKSS HMFGVPPSFA SQFQTKDAAI RLHAAQSSGS  480
VHVTAGMIRI SNMTPAVDSD MGWANGANDK NGDLSVVLSF GLVQRDDAMS KTATRAMLVF  540
LCLWVLLLSV SFKIVTMVSA R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-45816516171NO APICAL MERISTEM PROTEIN
1ut4_B4e-45816516171NO APICAL MERISTEM PROTEIN
1ut7_A4e-45816516171NO APICAL MERISTEM PROTEIN
1ut7_B4e-45816516171NO APICAL MERISTEM PROTEIN
3swm_A4e-45816519174NAC domain-containing protein 19
3swm_B4e-45816519174NAC domain-containing protein 19
3swm_C4e-45816519174NAC domain-containing protein 19
3swm_D4e-45816519174NAC domain-containing protein 19
3swp_A4e-45816519174NAC domain-containing protein 19
3swp_B4e-45816519174NAC domain-containing protein 19
3swp_C4e-45816519174NAC domain-containing protein 19
3swp_D4e-45816519174NAC domain-containing protein 19
4dul_A4e-45816516171NAC domain-containing protein 19
4dul_B4e-45816516171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013613101.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6413560.0KP641356.1 Brassica napus NAC transcription factor 78.1 (NAC78.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613101.10.0PREDICTED: NAC domain-containing protein 78-like isoform X1
SwissprotQ84K000.0NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A0D3EHW20.0A0A0D3EHW2_BRAOL; Uncharacterized protein
STRINGBo9g180050.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31922762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.10.0NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  6. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]