PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013612533.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | B3 | ||||||||
Protein Properties | Length: 286aa MW: 32064.7 Da PI: 4.2271 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 5e-15 | 16 | 106 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv +p+d++ l +p +f ++ + + +k +t+++ +g +W++kl+ ++ ++++ + +GWk+ vk+ +Lk g+f+ F++dg++ f++ XP_013612533.1 16 FFKVYLPNDSGD--DLEIPVSFN-SClpS-S--VPKSVTVTNINGHVWKLKLKKlSGDPEKFSMVDGWKRIVKDEDLKGGEFLAFEFDGSRLFNF 104 889997766665..59******8.66543.3..45569999***********666888888*************************999777755 PP EE CS B3 93 vv 94 +v XP_013612533.1 105 CV 106 54 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-17 | 9 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-18 | 9 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.111 | 14 | 110 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.72E-15 | 14 | 107 | No hit | No description |
SMART | SM01019 | 2.5E-13 | 16 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.8E-13 | 16 | 106 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.0E-7 | 182 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 8.04E-11 | 182 | 279 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MKKVSGDSSD GRLPKFFKVY LPNDSGDDLE IPVSFNSCLP SSVPKSVTVT NINGHVWKLK 60 LKKLSGDPEK FSMVDGWKRI VKDEDLKGGE FLAFEFDGSR LFNFCVYGQA TCKKLGKSAE 120 VEEDESDDDD DDDVIVIDDD DDDDDDDDEV DDEDVDVDVE ADDVDDGMEA DGDDDHRQLL 180 DDPDSPSFTV ILNPKKKSQL LIPSHIMKDY NLHFTERITI VDPLVPKFGT LERKIKLQDN 240 GCLFVKGFGS VFRRNNVKTT DTIICEVKKN GNDVAHILKV HIVRGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 5e-14 | 6 | 112 | 1 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013612533.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013612533.1 | 0.0 | PREDICTED: B3 domain-containing protein At5g60130-like isoform X1 | ||||
Refseq | XP_013713841.1 | 0.0 | B3 domain-containing protein At5g60130-like isoform X1 | ||||
Swissprot | Q9LVG1 | 6e-98 | Y5013_ARATH; B3 domain-containing protein At5g60130 | ||||
TrEMBL | A0A0D3ECZ6 | 1e-163 | A0A0D3ECZ6_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g141110.1 | 1e-164 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4947 | 18 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60142.1 | 6e-51 | B3 family protein |
Publications ? help Back to Top | |||
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