PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_013606084.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | C2H2 | ||||||||
Protein Properties | Length: 491aa MW: 51645.9 Da PI: 7.2664 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.7 | 2e-05 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_013606084.1 61 FVCEICSKGFQRDQNLQLHRRGH 83 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.5e-05 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+ks+ +s+ k H + + XP_013606084.1 137 YKCEKCSKSYAVQSDWKAHSKIC 159 9******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 5.8E-5 | 60 | 83 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.85E-7 | 60 | 83 | No hit | No description |
SMART | SM00355 | 0.036 | 61 | 83 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.887 | 61 | 83 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 63 | 83 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 81 | 102 | 132 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.9E-5 | 125 | 158 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.85E-7 | 132 | 157 | No hit | No description |
SMART | SM00355 | 65 | 137 | 157 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 491 aa Download sequence Send to blast |
MPVDLDDSST VSGDASVSST GNQNPPPQSA VKKKRNLPGM PDPDSEVIAL SPKTLMTTNR 60 FVCEICSKGF QRDQNLQLHR RGHNLPWKLR QRSSKEVRKK VYVCPVSGCV HHDPSRALGD 120 LTGIKKHFCR KHGEKKYKCE KCSKSYAVQS DWKAHSKICG SKEYRCDCGT LFSRRDSFIT 180 HRAFCDVLAE ESAKNHTQSK KLYPETVSES QQKSPAAVES PPPSPSPPPV APSVSVSVES 240 ETEPEPANIA SSLVLPIQDS SDDPENNTLE VIMEEAPGTI GLNGSNDHSN NSKSVYAALF 300 ASSSSSSPSL YAASSTPSPS LFPPSSSMEP ISLCLSTTGP SLFGATIQDP PPPHFLTPLL 360 PPPQPAISAT ALLQKAAQMG STGSGGSLLR GLGIVSTTSS PMELSSHDAG FGLGLGLPCS 420 SGPGLKELMM GNSSVFDPKQ TTLDFLGLGR AVGNGGNNTG GGLSALFGGG GGMDVFGSGE 480 LSDNDTGRRS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-31 | 133 | 199 | 3 | 69 | Zinc finger protein JACKDAW |
5b3h_F | 1e-31 | 133 | 199 | 3 | 69 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 99 | KLRQRSSKEVRKK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}. | |||||
Uniprot | TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_013606084.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189225 | 0.0 | AC189225.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB011P07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606084.1 | 0.0 | PREDICTED: protein indeterminate-domain 1-like isoform X1 | ||||
Swissprot | Q9LVQ7 | 0.0 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A0D3E2M2 | 0.0 | A0A0D3E2M2_BRAOL; Uncharacterized protein | ||||
STRING | Bo9g021710.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM155 | 28 | 306 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-167 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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