PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_013603484.1

Organism

Brassica oleracea

Taxonomic ID

3712

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 323aa MW: 36982.7 Da PI: 5.4155

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_013603484.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.5	4.5e-52	11	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPt+eel+++yL+kk+++ k++l++vi++vd++k+ePwd+++ k+ + +++wyfFs++dkky+tg+r+nrat+ g+Wkatg+dk + XP_013603484.1 11 VPPGFRFHPTEEELLQYYLRKKISNIKIDLDDVIRDVDLNKLEPWDIQEmcKIGTtPQNDWYFFSHKDKKYPTGTRTNRATTVGFWKATGRDKII 105 69*******************************************962433332455******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +s +g +g++ktLvfykgrap+g+k+dW+mheyrl XP_013603484.1 106 YS-NGDRIGMRKTLVFYKGRAPHGQKSDWIMHEYRL 140 .9999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-56	8	177	IPR003441	NAC domain
PROSITE profile	PS51005	55.084	11	177	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	12	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MNISVNGQSQ VPPGFRFHPT EEELLQYYLR KKISNIKIDL DDVIRDVDLN KLEPWDIQEM 60 CKIGTTPQND WYFFSHKDKK YPTGTRTNRA TTVGFWKATG RDKIIYSNGD RIGMRKTLVF 120 YKGRAPHGQK SDWIMHEYRL DDNLLVSSSH LDDDVTLETC EVIGGDEGWV VCRVFMKKSL 180 CKTVNSSPPR SIKTPSFNEE TIGHFLEVME QSCKEETILD PFLKLPNLEC PNTVASYQRL 240 MDDQVSNCHV SKLVDPITSW ASLDRLVASQ LNGPNSYYEI PQSPFHGLNG PGYFNTGLTP 300 DYYIPEMDVW NDTDFGRTTP SSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-45	8	179	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-45	8	179	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-45	8	179	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-45	8	179	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	7e-45	8	179	17	170	NAC domain-containing protein 19
3swm_B	7e-45	8	179	17	170	NAC domain-containing protein 19
3swm_C	7e-45	8	179	17	170	NAC domain-containing protein 19
3swm_D	7e-45	8	179	17	170	NAC domain-containing protein 19
3swp_A	7e-45	8	179	17	170	NAC domain-containing protein 19
3swp_B	7e-45	8	179	17	170	NAC domain-containing protein 19
3swp_C	7e-45	8	179	17	170	NAC domain-containing protein 19
3swp_D	7e-45	8	179	17	170	NAC domain-containing protein 19
4dul_A	6e-45	8	179	14	167	NAC domain-containing protein 19
4dul_B	6e-45	8	179	14	167	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Mostly expressed in anthers. Also present in pollen, base of siliques and inflorescence stems. {ECO:0000269\|PubMed:16214898}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues such as tracheary elements. {ECO:0000269\|PubMed:16214898}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_013603484.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603484.1	0.0	PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 66
Swissprot	Q9M274	0.0	NAC66_ARATH; NAC domain-containing protein 66
TrEMBL	A0A3P6GGZ2	0.0	A0A3P6GGZ2_BRAOL; Uncharacterized protein
STRING	Bra007640.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM778	28	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61910.1	0.0	NAC domain protein 66

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Yang C, et al. Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation. Plant Physiol., 2017. 175(1): p. 333-350 [PMID:28724622]