PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013596199.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 216aa    MW: 24706.7 Da    PI: 10.7079
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013596199.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1439.8e-14146196454
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                     ++r +r++kNRe+A rsR+RK+a++ eLe  +  L++eN +Lk + e+lk 
  XP_013596199.1 146 DRRHKRMIKNRESAARSRARKQAYTNELELAISHLQKENARLKRQEEQLKM 196
                     799****************************************99999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-12138196No hitNo description
SMARTSM003381.1E-9143203IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.99145195IPR004827Basic-leucine zipper domain
PfamPF001702.6E-11146195IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.69E-10147195No hitNo description
CDDcd147071.53E-23147201No hitNo description
PROSITE patternPS000360150165IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MLSSAKHKIN HSAFSVSSSS SSLPHSYSQA KNMTQVTMEE VWKDINLASL HQHRQLNIDH  60
EPVLSNQNPN NSIFKDFLKK PLNQEPQPLP PSSSSSTLHR SLPPPPPETV LSLNPHSINT  120
HFDESARFGC FGMKRGGQES DESRGDRRHK RMIKNRESAA RSRARKQAYT NELELAISHL  180
QKENARLKRQ EEQLKMAEAT QHQTKRKLQR SWTTPF
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed on the flanks of the shoot apex. {ECO:0000269|PubMed:23543784}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the transition to flowering promoted by FT. {ECO:0000269|PubMed:23543784}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013596199.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013596199.11e-159PREDICTED: protein FD
RefseqXP_013747008.11e-159bZIP transcription factor 27-like
SwissprotQ7PCC61e-84FDP_ARATH; bZIP transcription factor 27
TrEMBLA0A078GCZ81e-124A0A078GCZ8_BRANA; BnaA07g03000D protein
TrEMBLA0A3P6BCR91e-124A0A3P6BCR9_BRACM; Uncharacterized protein
STRINGBo7g014040.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19342772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17770.27e-74basic region/leucine zipper motif 27
Publications ? help Back to Top
  1. Jang S,Li HY,Kuo ML
    Ectopic expression of Arabidopsis FD and FD PARALOGUE in rice results in dwarfism with size reduction of spikelets.
    Sci Rep, 2017. 7: p. 44477
    [PMID:28290557]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]