PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594668.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 704aa    MW: 78788.2 Da    PI: 8.4441
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594668.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.37.8e-1523991295
                    HTT-EE--HHH.HTT...---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 12 ksgrlvlpkkfaeeh...ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     ++ l +p  f+++h      +   k  +l++  s + W+vk+  ++++    lt+GW++F+ a++L++gD++vF+++g++ f  +v+
  XP_013594668.1 23 HTH-LNIPVAFFSKHvvgR--HDHVKIAKLRTyASDKNWKVKM--DGSK----LTDGWEDFAVAHDLRVGDMIVFRHEGEMVF--HVT 99
                    444.99*********9753..334457888887889*******..9999....***********************9998888..665 PP
2B359.84.7e-19160249798
                     .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     ++++lk++ l+l k+f++++g++k +s +++l++e+g +W++ l++ k+ ++++l+ GW  F++ ng+k+ D+++Fkl++ ++ ++v+ ++ 
  XP_013594668.1 160 SNSSLKHNKLYLGKEFVAANGLNKGCS-EIVLKNERGGRWTLPLKHYKSINHTYLGPGWTPFCQVNGIKAEDSFMFKLVR-TGDKPVLCLCP 249
                     67899999****************998.****************99********************************98.66668888875 PP
3B345.11.8e-14308421296
                     EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.............................-EEEEEE..EEETTEEEE-TTHHH CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.............................rsWevkliyrkksgryvltkGWke 67 
                     ++ +++  + k+ +l lp  fa+++g++k++  ++tl  ++g                             ++W+v++  ++ +    lt GW++
  XP_013594668.1 308 LTLTLTQKAVKRYQLFLPMGFAKRNGINKPG--KITLLGQDGtipvafflkhvqgrndqikiaklttdasdNTWTVRM--DGLK----LTHGWED 394
                     55566777778888***********999766..79999999999999999999999999999999999999*******..6666....******* PP

                     HHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3  68 FvkangLkegDfvvFkldgrsefelvvkv 96 
                     F+ a++L++gD++vF+++g+ ef  +v++
  XP_013594668.1 395 FALAHDLRVGDMIVFRHEGELEF--HVTA 421
                     ****************8775444..7765 PP
4B364.31.9e-20459550598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++s++l+++rl+lp +fa+++g++k ++ +++l +e+grsW++kl+++k++ +++++ GW++F+ +ng+  g   ++kl++ +++ +v+k++ 
  XP_013594668.1 459 KVSSSNLRLDRLYLPMSFARTNGLDKMSGEEIILLNEEGRSWSLKLKHDKSDMHTFIRPGWRRFCAENGMSHGHY-TLKLVR-NSGPPVIKLCG 550
                     5689*********************************************************************96.999987.77779999986 PP
5B365.76.8e-21573664598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      ++s++lk++ l+l kkf++e+g++  +s +++l++e+g +W++ l+   + ++++l+ GW+ F++ ng+k+gD++ Fkl+g ++ ++v+ ++ 
  XP_013594668.1 573 SVTSNSLKTDKLYLGKKFVSENGLDRGCS-EVVLKNEWGGRWSLALRCYESAKQTYLGPGWRTFCQVNGIKVGDSFKFKLVG-TGDNPVLLLCT 664
                     57999********************8887.****************99999999**************************99.55557777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-199106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1810111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.44811104IPR003340B3 DNA binding domain
CDDcd100172.11E-141299No hitNo description
SMARTSM010192.6E-2114104IPR003340B3 DNA binding domain
PfamPF023621.4E-82596IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-16152250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.49E-13154249No hitNo description
PROSITE profilePS5086312.76154250IPR003340B3 DNA binding domain
SMARTSM010197.2E-20155251IPR003340B3 DNA binding domain
SuperFamilySSF1019368.83E-17155251IPR015300DNA-binding pseudobarrel domain
PfamPF023629.4E-18159249IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.7E-24297435IPR015300DNA-binding pseudobarrel domain
CDDcd100172.51E-12306420No hitNo description
SMARTSM010193.1E-15307425IPR003340B3 DNA binding domain
PfamPF023622.7E-10307419IPR003340B3 DNA binding domain
PROSITE profilePS5086311.589307425IPR003340B3 DNA binding domain
SuperFamilySSF1019361.37E-15349432IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-16451545IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15452549IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.183455552IPR003340B3 DNA binding domain
CDDcd100171.38E-14455549No hitNo description
SMARTSM010193.3E-26456552IPR003340B3 DNA binding domain
PfamPF023623.2E-19458550IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-17565663IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-18567668IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.184569665IPR003340B3 DNA binding domain
CDDcd100173.74E-16569663No hitNo description
SMARTSM010191.3E-20570666IPR003340B3 DNA binding domain
PfamPF023621.4E-19573665IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MVDEFLYSPI KPHFFQPLLP GFHTHLNIPV AFFSKHVVGR HDHVKIAKLR TYASDKNWKV  60
KMDGSKLTDG WEDFAVAHDL RVGDMIVFRH EGEMVFHVTA LGPSCCEIQY TSTHNINDDS  120
HDETNNIGNS SREKRKRVKK NPKPVPQASL HSSCYVGSVS NSSLKHNKLY LGKEFVAANG  180
LNKGCSEIVL KNERGGRWTL PLKHYKSINH TYLGPGWTPF CQVNGIKAED SFMFKLVRTG  240
DKPVLCLCPE ESSHRDKTPL ECLEDSDDVN PLSSSTCSGD KSSKSKESKE ESLGDKRASS  300
SYSEDRFLTL TLTQKAVKRY QLFLPMGFAK RNGINKPGKI TLLGQDGTIP VAFFLKHVQG  360
RNDQIKIAKL TTDASDNTWT VRMDGLKLTH GWEDFALAHD LRVGDMIVFR HEGELEFHVT  420
ALGPSCCEIQ YTSSHNINHN QTNNIDACSL SDHSRFVAKV SSSNLRLDRL YLPMSFARTN  480
GLDKMSGEEI ILLNEEGRSW SLKLKHDKSD MHTFIRPGWR RFCAENGMSH GHYTLKLVRN  540
SGPPVIKLCG QVHNRPKQVP VVSSLHHSCF VGSVTSNSLK TDKLYLGKKF VSENGLDRGC  600
SEVVLKNEWG GRWSLALRCY ESAKQTYLGP GWRTFCQVNG IKVGDSFKFK LVGTGDNPVL  660
LLCTRKTPLE CPEESSGSDT SSGDDSSKSQ ESEEESLGDK NISQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594668.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6085633e-82AB608563.1 Raphanus sativus DNA, microsatellite locus RsSR037, cultivar: rat-tail radish.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594668.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-130REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A3P6EB490.0A0A3P6EB49_BRAOL; Uncharacterized protein
STRINGBra012445.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-129B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]