PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594025.1
Organism
Brassica oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRF
Protein Properties Length: 463aa    MW: 50622.3 Da    PI: 9.3792
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594025.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.4e-25195238144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk +e
  XP_013594025.1 195 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKLVE 238
                     79***************************************998 PP
2QLQ54.63.4e-19131167137
             QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     ++FT +Q+++L++Q+l+yKy+ an+PvP+ Ll  iqk
  XP_013594025.1 131 GPFTLTQWAELEQQALIYKYITANVPVPSSLLISIQK 167
                     59*********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-12131167IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.8E-13132166IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.884132167IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.463195239IPR014977WRC domain
PfamPF088793.3E-21196238IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MDTGTHVPGS VTSNVNGSPD LKEDRSGLPR SSKLARTTTM AEDKSMSPPY AAPYSKSFGF  60
PLMRSASDSL RQEQMLSFSD KPEAQDFSKY VCLDNKNSLS PFLHQFPPQY RSYSGGGYGC  120
GGMMMSMQGK GPFTLTQWAE LEQQALIYKY ITANVPVPSS LLISIQKSFF PYGSLPPSSF  180
GWGSFHLGFA GGNMDPEPGR CRRTDGKKWR CSRDAVPDQK YCERHINRGR HRSRKLVEVQ  240
SNQTAAASKA VTAQQQSVVA GGINRNRSLT TAAQYINPST DSPPNNRVCP STVNLQAKES  300
PKQRHNNSSF EFGHISSDSL VNPNSAKSLL GSTYLDFSGN QDKHNHSSWP EERKSDWTQL  360
SMSIPVASSS SSPSSTHITG EDKTTLSPLR LSQESEQETL KKVNTWIPIS WGNSLGGPLG  420
EVLNSTTNSP TLVSSPTGVL QKSTFCPLSN SPVAESNNFR YTT
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269|PubMed:20023165}.
UniprotTISSUE SPECIFICITY: Strongly expressed in actively growing and developing tissues, such as roots, upper stems, and shoot tips containing the shoot apical meristem (SAM) and flower buds. Detected in young leaf primordium. Also expressed in mature flowers, but weakly expressed in mature stems and leaves. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:21036927}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000269|PubMed:12974814, ECO:0000269|PubMed:15326298, ECO:0000269|PubMed:20023165, ECO:0000269|PubMed:21036927}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_013594025.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8316630.0JN831663.1 Brassica napus growth-regulating factor 2 (GRF2b2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594025.10.0PREDICTED: growth-regulating factor 2-like
SwissprotQ8L8A80.0GRF2_ARATH; Growth-regulating factor 2
TrEMBLA0A0D3DI750.0A0A0D3DI75_BRAOL; Uncharacterized protein
STRINGBo7g118730.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14542886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.10.0growth-regulating factor 2
Publications ? help Back to Top
  1. Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P
    Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves.
    Plant Cell, 2013. 25(9): p. 3570-83
    [PMID:24076976]
  2. Liu J,Rice JH,Chen N,Baum TJ,Hewezi T
    Synchronization of developmental processes and defense signaling by growth regulating transcription factors.
    PLoS ONE, 2014. 9(5): p. e98477
    [PMID:24875638]
  3. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]