PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_012573992.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WRKY

Protein Properties

Length: 288aa MW: 33591.3 Da PI: 6.5046

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_012573992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	62.4	7.7e-20	100	160	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dDg++WrKYGqK+++ s+++r+YYrC+++ +C ++k+v+r +e p + + tY +H+++ XP_012573992.1 100 DDGHQWRKYGQKTIQTSKYARNYYRCSHKfeeRCDATKQVQRIQEKPPLYKSTYYTHHTCK 160 8*************************99999***********************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.6E-21	85	160	IPR003657	WRKY domain
PROSITE profile	PS50811	17.683	94	157	IPR003657	WRKY domain
SuperFamily	SSF118290	9.02E-21	97	161	IPR003657	WRKY domain
SMART	SM00774	3.6E-26	99	161	IPR003657	WRKY domain
Pfam	PF03106	1.9E-21	100	160	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MDEAIMEEVV RGREFADELR QILVDVAVVK MNHAHHLLNN ILNSFTNTLF LLNKHQNQIK 60 DFSFTTKSED SQDSSATGRG SYKRRKSTET WEKVSESETD DGHQWRKYGQ KTIQTSKYAR 120 NYYRCSHKFE ERCDATKQVQ RIQEKPPLYK STYYTHHTCK YLPNPADIIF DPPHHTNSSI 180 LLSFNNTFPT PTKQDCSFLS SSSFSCNKEE LVIPSPNNSF DIDHQHLPPP VHQHIILDDN 240 TPPPPPPPPL LSTLQFHDHD DDIMYGLFYH DSLHHHDDHF FHPFPEFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	2e-17	100	160	9	69	OsWRKY45
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_012573992.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012573992.1	0.0	WRKY DNA-binding transcription factor 70-like
TrEMBL	A0A1S3EDS2	0.0	A0A1S3EDS2_CICAR; WRKY DNA-binding transcription factor 70-like
STRING	XP_004510098.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1995	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66600.1	7e-22	ABA overly sensitive mutant 3