PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_012572552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WOX | ||||||||
Protein Properties | Length: 371aa MW: 42843.1 Da PI: 7.3107 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.4 | 3.7e-21 | 107 | 167 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+ ql +Leel+++ ++psae+++++A++l +++ ++V++WFqN++a+e++ XP_012572552.1 107 SSRWSPTPVQLLVLEELYRQgMKTPSAEQIQQIASQLrqfgKIEGKNVFYWFQNHKARERQ 167 58*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 113.3 | 1.3e-36 | 106 | 169 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ XP_012572552.1 106 QSSRWSPTPVQLLVLEELYRQGMKTPSAEQIQQIASQLRQFGKIEGKNVFYWFQNHKARERQKR 169 689***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.28E-13 | 101 | 170 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.92 | 103 | 168 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-7 | 105 | 172 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-9 | 108 | 167 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 8.1E-19 | 108 | 167 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.86E-4 | 109 | 163 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MFLLQRSFVP PINTVFFHNF LSILSSLTLL TLFSNREIFR DLSFPSFLSA TPNSNHNSHA 60 PPKIATISSI VQPYCICTHC NHLLPFNHHV EQEQEQGTSN NMQGQQSSRW SPTPVQLLVL 120 EELYRQGMKT PSAEQIQQIA SQLRQFGKIE GKNVFYWFQN HKARERQKRR RREMEETTAS 180 STQDKKDKHK FLMGNSQMQE DAGLKETKKW ASTSNCSEHA EQENAVALDI AEKGSSGWAQ 240 FEERDIQLQV LRKNIAEKQG KCQNIEIPYY FPPFTIPTTT TSSTSVAAYR TLCSNNNNTQ 300 ILTPPNYVLN RENLKYYEEQ NAEPRTLDLF PVKGDHELQD QRKSMFCVND SMDTEIITSS 360 NQFFEFLPLR N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_012572552.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012572552.1 | 0.0 | WUSCHEL-related homeobox 6 isoform X1 | ||||
TrEMBL | A0A1S3E9P7 | 0.0 | A0A1S3E9P7_CICAR; WUSCHEL-related homeobox 6 isoform X1 | ||||
STRING | XP_004505406.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15154 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01500.1 | 3e-27 | WOX family protein |