PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011096280.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family MYB_related
Protein Properties Length: 478aa    MW: 53667.1 Da    PI: 10.5359
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011096280.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.94.1e-071347338
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      W t+E+++l  av ++G+++W+ +a++++  Rtl+
   XP_011096280.1 13 GWGTWEELILGGAVLRHGTRDWNVVASELQ-ARTLY 47
                     5*****************************.9*987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002974.4E-1592371IPR001487Bromodomain
SuperFamilySSF473701.3E-17259370IPR001487Bromodomain
Gene3DG3DSA:1.20.920.103.5E-16262369IPR001487Bromodomain
CDDcd043695.54E-7273366No hitNo description
PfamPF004392.1E-10276355IPR001487Bromodomain
PROSITE profilePS5001410.263282352IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MGAEAAVLGP KTGWGTWEEL ILGGAVLRHG TRDWNVVASE LQARTLYPHS FTPEVCKAKY  60
EDLLRRYCGS TAWFEELRKR RVAELKRELA RSEDSIGSLE SKIKSLEAEK QSSNHADYGS  120
SQTESPLPAL NSDGTESSGK EVSKDEYSAG SFTKDTRTRT SWLCERHPQE METDTKPDVS  180
VSSEQDKDLS IGKVVGVGYG QGVTIRKRRG QRKRKDCNRA VKEASVGESD NLGSYNITST  240
TQKEASTTDC AQTIRDSCIN NRNGGSHTVK RHNLMEIFQS VARSEPAAVF RHRMDSQKRA  300
RYRKVIKQHL DIGTIRSRIM GQSIKSAKEL FRDLLLLANN ALVFYSRRTR EYKSALCLRQ  360
LVMKEYKQQC RGSCQEATSA FLPFNPPVKP RSARARPRPR PPSCKEKVAS EKLLPNAEKV  420
VPPSNPKTSE KPCTDKNVSL KSLLKPKKGM KRPGKGKPEL ADTRPKTSPV KQRKRVRK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445451PKKGMKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011096280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096280.10.0uncharacterized protein LOC105175520 isoform X1
RefseqXP_011096281.10.0uncharacterized protein LOC105175520 isoform X1
TrEMBLA0A2G9HQF00.0A0A2G9HQF0_9LAMI; Uncharacterized protein
STRINGMigut.H01498.1.p1e-179(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.11e-20DNA-binding bromodomain-containing protein