PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011096171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | bHLH | ||||||||
Protein Properties | Length: 463aa MW: 50717.8 Da PI: 5.2319 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.7 | 1.3e-05 | 351 | 388 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L XP_011096171.1 351 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 388 677888999*******998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.973 | 339 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-11 | 349 | 401 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.85E-6 | 349 | 393 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-8 | 353 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MASEEFQGGV CGGNWWNPSR NLFGSPCSLP TNDIGSFGWS NYDLIMDMKA PRSNDESVGS 60 AADGRKPQQE SAANGTMSVD STLQMMGINL SSSTTPDDWN QDFLHDSGRS DGNYTNILQD 120 SSMNYRQETR VDYPQIHKNW SSNNFSEDSS VNSFKQANQT FPLEHHQQFN SVTSSSDCVT 180 TCQGLSAGFP LNSTSYSYTS SLLQTLFDTD SQPQQSLLDN QAMNYSSAAT DTLNSDEFLA 240 SLAKVSPAED PSFTRQQPTN HLPFTNNAPL WKATAGLSTV PTNFLPSAQS GQFPPSSLNI 300 KIPNLPSFSQ KHQNGEARDL ASLAKKAGNE PATFKRPRIE TPSPLPTFKV RKEKLGDRIT 360 ALQQLVSPFG KTDTASVLHE AIEYIKFLHD QVSVLSTPYL KNGSPSSQRQ QAADYSRVNK 420 DQQGLIQDLK SRGLCLVPIS STFPVASETS SDFWTPTFGG SFK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011096171.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096171.1 | 0.0 | transcription factor bHLH112 isoform X1 | ||||
TrEMBL | D7SSM5 | 1e-163 | D7SSM5_VITVI; Uncharacterized protein | ||||
STRING | VIT_00s0274g00070.t01 | 1e-163 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA860 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61660.1 | 2e-57 | bHLH family protein |