PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011095646.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C2H2
Protein Properties Length: 549aa    MW: 61541.6 Da    PI: 8.5662
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011095646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.00026432454123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C+k F+++  L  H+++H
  XP_011095646.1 432 HQCKACDKAFPTHQALGGHMSSH 454
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.366890IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7676890IPR007087Zinc finger, C2H2
PfamPF139129.5E-76990IPR007087Zinc finger, C2H2
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM003550.095156178IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245156183IPR007087Zinc finger, C2H2
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
PfamPF139122.5E-6158180IPR007087Zinc finger, C2H2
SuperFamilySSF576673.46E-6431454No hitNo description
SMARTSM003550.016432454IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.245432454IPR007087Zinc finger, C2H2
PfamPF139127.5E-8432456IPR007087Zinc finger, C2H2
PROSITE patternPS000280434454IPR007087Zinc finger, C2H2
SuperFamilySSF576673.46E-6487504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MVNNQEEAMR SLLSLKKNKQ KSDVFGEDEL WVKLQFPEEE EGVGVGDQKM GFENKYDQMN  60
EYSSNMKRVC HICCKVFSSG KALGGHMRIH VLGGKRKDLI FKEKRKVHQT IKFKKQSPRE  120
ETVEKAVHFV EKKHHQYKKM TTGNCFGDSD DMVKSPSCII CGKNFPSMKS LFGHMRCHPE  180
REWRGIHPPP SWEKISSSSS SSLSDAEPQK FYDQMELSAS GGKNRAVDLT ESLRGWPVTA  240
KRGRKAMAVA ASSSEFSCSD DNQFRAVTYL MMLASGHLLE SGGAKRQTSA ESQAAESFCK  300
AKILEIDQVS KSKKFGTDYP VEQLGKELRN SSEFETVVMA GSGLVRGESV NKLEGQEWLD  360
QEHDQVDYFP DDDQLDSKIP GQLNDKGFEA TSNFKVPIKN KKKRKKLKLC ELELAKGSSP  420
TSPLHQNPPE KHQCKACDKA FPTHQALGGH MSSHYKFNVS IKNTNGTAQV KETKKHIAIK  480
GLSRNLFEET QHQCKTCDKN FSTARAPSSQ VPASEDTQIC RIMLDIDLNE APPSEGEAGV  540
GSQFSTYTW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1399406NKKKRKKL
2401405KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011095646.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0598426e-58KJ059842.1 Sesamum indicum clone TilSSR_31043 microsatellite Sesame_31043 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095646.10.0uncharacterized protein LOC105175037
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20502263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.15e-15C2H2 family protein