PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011091850.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family Trihelix
Protein Properties Length: 327aa    MW: 36334.5 Da    PI: 10.157
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011091850.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.57.1e-1849135186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  v +L+ea++ +++  +r+klk+++We+v+k++    +  +  ++++qCk+k+e+++kry+ + +   +   ++ss++p++ +l+
  XP_011091850.1  49 EWSEGAVSTLLEAYEAKWSLRNRAKLKGQDWEDVAKYVsaraHNSKSPKTQTQCKNKIESMKKRYRSESAAGAG---DASSSWPLYPRLD 135
                     5*************************************77555556678999***************9998887...56779****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2047135No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MERDQSKQDN NKNNNSSSLL SPKHSPTKHP HPNNNNITST NDQRLKRDEW SEGAVSTLLE  60
AYEAKWSLRN RAKLKGQDWE DVAKYVSARA HNSKSPKTQT QCKNKIESMK KRYRSESAAG  120
AGDASSSWPL YPRLDLLLRG NAAVAPMMHV QVANPPPVVV MGTSSPLPQP RGPLVPPPGS  180
AAVNSHESGG VDRSAKKDCN NNDPKLSEQE SHKNHIDDTD SSTGAVHADK EKSKGERTNN  240
NAMKRRRDHG HAGEIGESIR WLAEVVVRSE QARMETMREI ERIRVEAEAK RGEMDLKRTE  300
IIANTQLEIA KLFARGSVDS SLRMGRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011091850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091850.20.0trihelix transcription factor ASIL2-like, partial
TrEMBLA0A2G9G8H71e-110A0A2G9G8H7_9LAMI; Transcription factor GT-2
STRINGPGSC0003DMT4000138291e-105(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122511620
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.12e-74sequence-specific DNA binding transcription factors