PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_011087198.1

Organism

Sesamum indicum

Taxonomic ID

4182

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum

Family

LBD

Protein Properties

Length: 293aa MW: 33426.5 Da PI: 4.7688

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_011087198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.3	9e-37	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rr+C+++C lap fpa+qpk f+nvh+lFG++n+++llk+l+++++ +am+s+ ++A +r + PvyG++ i++l+ q++ +++el+ XP_011087198.1 10 ACAACKYQRRRCTPECLLAPFFPADQPKMFQNVHRLFGVKNIQNLLKELDPDQKAMAMKSIKFHAAMRDKYPVYGCLVEIQQLSYQIQMVEEELQ 104 7*********************************************************************************************9 PP DUF260 96 llkee 100 ++ ++ XP_011087198.1 105 AVLQQ 109 98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.302	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.8E-35	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MTLKSGTGQA CAACKYQRRR CTPECLLAPF FPADQPKMFQ NVHRLFGVKN IQNLLKELDP 60 DQKAMAMKSI KFHAAMRDKY PVYGCLVEIQ QLSYQIQMVE EELQAVLQQL AYYRQQQQQQ 120 EMSPTNDYLS ELQLGMAPPR NTALSLVHED NPPQYNGVVP TLPIAPQLSY SNSPNADHYS 180 YLDFKENNVV NSLCQQPYDS NSNDNNTNSL VMHSQQLVIP QPLPHVQQET TQDYNEMHPF 240 FDHIDDTQSY IGPKEAYESS LESSMKDSRQ LVEQMDENEL KSAAACFSLT SVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-28	6	113	7	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-28	6	113	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_011087198.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011087198.1	0.0	LOB domain-containing protein 27-like
TrEMBL	A0A022QA29	1e-127	A0A022QA29_ERYGU; Uncharacterized protein
STRING	Migut.D01865.1.p	1e-128	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-39	LOB domain-containing protein 27