PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_011087078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
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Family | C2H2 | ||||||||
Protein Properties | Length: 243aa MW: 27832.8 Da PI: 8.1283 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00013 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k+F ++ L H++ H XP_011087078.1 71 FECQYCLKVFANSQALGGHQNAH 93 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.83E-6 | 67 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.9E-5 | 67 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.3E-6 | 71 | 95 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.427 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MERNSLSCSQ ERSSPEKKLK LFGVELEPSD ILETDRDKGF PSDRDESINS SASSTVTEKP 60 TGELELEDKK FECQYCLKVF ANSQALGGHQ NAHKKERMRK KRLQLQARKA TLNYYIQPFH 120 YNSSQHSNKH SYNCYGSSTT PAWYYDPSCH PPEFSIYDES QINFDVYGSD PIMNGRESSR 180 WHVDLTDYVP VQQNTRTFSL THVDRSSDKY SRAISNKPST GPNSSKKLCS RKNLDLQLGL 240 SLH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_011087078.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087078.1 | 0.0 | zinc finger protein 5 | ||||
TrEMBL | A0A2G9HUT8 | 9e-84 | A0A2G9HUT8_9LAMI; Uncharacterized protein | ||||
STRING | EOY00328 | 5e-64 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5136 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10480.1 | 1e-14 | zinc finger protein 5 |