PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085863.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 303aa    MW: 34619.1 Da    PI: 4.8463
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085863.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.41e-37101101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCaaCk++rrkC++ C+lapyfpa+q+k f+nvh+lFG+sn++k+l++l++e+ +edam+s++yeAe+r r PvyG+  +i +l+ +l+ + +el
  XP_011085863.1  10 ACAACKYQRRKCSPTCPLAPYFPANQSKMFQNVHRLFGVSNITKTLTRLKTEDqKEDAMKSIIYEAEIRERFPVYGCSVIICELRLRLQYALEEL 104
                     7************************************************766659**************************************** PP

          DUF260  95 allkee 100
                      +++++
  XP_011085863.1 105 RYVHAH 110
                     999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.9629111IPR004883Lateral organ boundaries, LOB
PfamPF031952.6E-3610107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MTVKGGTTLA CAACKYQRRK CSPTCPLAPY FPANQSKMFQ NVHRLFGVSN ITKTLTRLKT  60
EDQKEDAMKS IIYEAEIRER FPVYGCSVII CELRLRLQYA LEELRYVHAH LTTCRKQLDK  120
QVDYPSECWP SSQLDLAYCL SSDVPMAFQR QSGDNEMPNG INQFFLNNGS GFYAESSLDN  180
LARPLLDFEP CSDTMSVNNL TAVQAQMESI NIQQEMNVFF QDFEGDTQSY SETKEAFESR  240
YIFPVFILNL SHECFIEIHG YTLNFHEQLR VVAEGYNTIS GSNLPEGPQD CCCGLQSHYH  300
ELE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-2561117111LOB family transfactor Ramosa2.1
5ly0_B4e-2561117111LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085863.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085863.10.0LOB domain-containing protein 22-like
TrEMBLA0A2Z7CRZ63e-74A0A2Z7CRZ6_9LAMI; LOB domain-containing protein 27-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.14e-40LOB domain-containing protein 27