PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011085862.1
Organism
Sesamum indicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 272aa    MW: 30564.3 Da    PI: 5.3771
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011085862.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.42.7e-39101101100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     aCaaCk++rrkC++ C+lapyfpa+qpk f+nvh+lFG+sn++k++++l++++ redam+s++yeAe+r r PvyG+  +i +l+ ql+ + +el
  XP_011085862.1  10 ACAACKYQRRKCTPTCPLAPYFPANQPKMFQNVHRLFGVSNITKTINNLKTKDqREDAMKSIIYEAEMRERFPVYGCSVIICQLRLQLQYALEEL 104
                     7************************************************65544***************************************** PP

          DUF260  95 allkee 100
                      +++++
  XP_011085862.1 105 RYVHAK 110
                     999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.839111IPR004883Lateral organ boundaries, LOB
PfamPF031957.2E-3810107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MTVKGGTTPA CAACKYQRRK CTPTCPLAPY FPANQPKMFQ NVHRLFGVSN ITKTINNLKT  60
KDQREDAMKS IIYEAEMRER FPVYGCSVII CQLRLQLQYA LEELRYVHAK QVDHHPSECW  120
PSAQLEFGSC LSSDMPTAFQ RPSVGSETPY GVNQFFLNDC SGFYAESSPD SLPRPLLGFE  180
PCSDTMSNNN LTAVQAQMES ISIQQERNAF FQDFQGMPFN TTIDDRQSYI ETKDAFESSS  240
ESSLKDTTQS VEQISQRDLK TAAAGFSLTT VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2821084108LOB family transfactor Ramosa2.1
5ly0_B3e-2821084108LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_011085862.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085863.11e-131LOB domain-containing protein 22-like
TrEMBLA0A2Z7CRZ64e-88A0A2Z7CRZ6_9LAMI; LOB domain-containing protein 27-like
STRINGEMJ176575e-72(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.17e-40LOB domain-containing protein 27